RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 VDAC1P21796 283 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 BSPH1Q075Z2 132 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 FAM122CQ6P4D5 195 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 SEZ6L2Q6UXD5 910 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 ZIC4Q8N9L1 334 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 ZBTB34Q8NCN2 500 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 OR5M8Q8NGP6 311 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 ST8SIA2Q92186 375 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 FRZBQ92765 325 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 PLSCR3Q9NRY6 295 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 SCTP09683 121 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 GFRA1P56159 465 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 BPIFB3P59826 476 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 FAM74A1Q5RGS3 127 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 MISP3Q96FF7 219 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 Q96M66 194 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 HES4Q9HCC6 221 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 FAM24AA6NFZ4 105 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 F2RL2O00254 374 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 NDUFA2O43678 99 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 OR7C2O60412 319 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 B3GALNT1O75752 331 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 LY86O95711 162 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 OPRK1P41145 380 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 RAB5BP61020 215 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 POLR2GP62487 172 aaKnown RBP eCLIP6.35□□□□□ -1.39
SYNE1-213ENST00000448038 TOR2AQ5JU69 321 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 OR52L2PQ8NGH6 319 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 MARS2Q96GW9 593 aaKnown RBP6.35□□□□□ -1.39
SYNE1-213ENST00000448038 UQCC1Q9NVA1 299 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 SHISA3A0PJX4 238 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 HPXP02790 462 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 TNXAQ16473 311 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 VAX1Q5SQQ9 334 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 OR2C3Q8N628 320 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 MOB3AQ96BX8 217 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 NEIL1Q96FI4 390 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-213ENST00000448038 TNFRSF19Q9NS68 423 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 GNG13Q9P2W3 67 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 HSF4Q9ULV5 492 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 VSIG4Q9Y279 399 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 DIDO1Q9BTC0 2240 aaKnown RBP6.35□□□□□ -1.39
SYNE1-213ENST00000448038 IGKV3D-15A0A087WSY6 115 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 IGHV1-69-2A0A0G2JMI3 117 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 TMEM14DPA8MWL7 114 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 KRBOX1C9JBD0 128 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 NUPL2O15504 423 aaKnown RBP6.35□□□□□ -1.39
SYNE1-213ENST00000448038 METTL15P1P0C7V9 234 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 M6PRP20645 277 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 OR2B8PP59922 312 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 IFITM3Q01628 133 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 EXOSC2Q13868 293 aaKnown RBP6.35□□□□□ -1.39
SYNE1-213ENST00000448038 AQP3Q92482 292 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 NUDT16L1Q9BRJ7 211 aaKnown RBP6.35□□□□□ -1.39
SYNE1-213ENST00000448038 REPIN1Q9BWE0 567 aaKnown RBP6.35□□□□□ -1.39
SYNE1-213ENST00000448038 MYO7BQ6PIF6 2116 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 SCN8AQ9UQD0 1980 aa6.35□□□□□ -1.39
SYNE1-213ENST00000448038 REG1BP48304 166 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 SLC38A11Q08AI6 406 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 FOXF2Q12947 444 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 PSG7Q13046 419 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 HMGN3Q15651 99 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 PRSS54Q6PEW0 395 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 ETV3LQ6ZN32 361 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF680Q8NEM1 530 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 MRPL24Q96A35 216 aaKnown RBP6.34□□□□□ -1.39
SYNE1-213ENST00000448038 MRGPRFQ96AM1 343 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 NTNG2Q96CW9 530 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 NIPSNAP3BQ9BS92 247 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 A0A1W2PN81 502 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 ODAMA1E959 279 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 E9PLN8 166 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 K7EQM0 130 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 COX7A2P2O60397 106 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 OR13C7P0DN81 318 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 CHRNA7P36544 502 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 ERVFRD-1P60508 538 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 NHLH1Q02575 133 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 IL24Q13007 206 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 HAGHQ16775 308 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 TMEM255AQ5JRV8 349 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 GCSAMQ8N6F7 178 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 OR5C1Q8NGR4 320 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 FLYWCH2Q96CP2 140 aaKnown RBP6.34□□□□□ -1.39
SYNE1-213ENST00000448038 HARBI1Q96MB7 349 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 VKORC1Q9BQB6 163 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 ABHD14AQ9BUJ0 271 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 POLEQ07864 2286 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 A1L4Q6 167 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 K7N7A8 449 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 RAB29O14966 203 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 ATP5J2P56134 94 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 H3F3CQ6NXT2 135 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 RPUSD3Q6P087 351 aaKnown RBP6.34□□□□□ -1.39
SYNE1-213ENST00000448038 RNASE6Q93091 150 aaKnown RBP6.34□□□□□ -1.39
SYNE1-213ENST00000448038 MEGF10Q96KG7 1140 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 ELF5Q9UKW6 265 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-213ENST00000448038 A0A1B0GTI1 187 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 RBP4P02753 201 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 DAOP14920 347 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms