RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 FOXB2Q5VYV0 432 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 ZNF626Q68DY1 528 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 OR52M1Q8NGK5 317 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 OR1L1Q8NH94 360 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 UBALD1Q8TB05 177 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 ZNF596Q8TC21 504 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 C22orf15Q8WYQ4 148 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 ARL11Q969Q4 196 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 CMTM3Q96MX0 182 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 SLC6A7Q99884 636 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 SUCNR1Q9BXA5 334 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 RIMS4Q9H426 269 aaPredicted RBP10.09□□□□□ -0.79
USP40-205ENST00000430158 ZMAT3Q9HA38 289 aaKnown RBP10.09□□□□□ -0.79
USP40-205ENST00000430158 ZNF286AQ9HBT8 521 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 Q9N2K0 584 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 IDI2-AS1Q9NZ38 188 aa10.09□□□□□ -0.79
USP40-205ENST00000430158 FBN1P35555 2871 aaKnown RBP10.08□□□□□ -0.8
USP40-205ENST00000430158 A0A0U1RQK1 487 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 A0A1W2PRD5 423 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 A0A1W2PRF3 423 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 A0A1W2PRM7 423 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 ZNF701M0R085 212 aaPredicted RBP10.08□□□□□ -0.8
USP40-205ENST00000430158 SSX5O60225 188 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 HBZP02008 142 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 EIF4EP06730 217 aaKnown RBP10.08□□□□□ -0.8
USP40-205ENST00000430158 GSTP1P09211 210 aaKnown RBP10.08□□□□□ -0.8
USP40-205ENST00000430158 COX7A1P24310 79 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 FPR2P25090 351 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 SAA4P35542 130 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 DEFB112Q30KQ8 113 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 MIDNQ504T8 468 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 UBE2NLQ5JXB2 153 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 C6orf183Q5T699 404 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 HACD4Q5VWC8 232 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 TRAT1Q6PIZ9 186 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 DYNAPQ8N1N2 210 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 SAMD12Q8N8I0 201 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 OR4P4Q8NGL7 312 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 ACOT12Q8WYK0 555 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 CMSS1Q9BQ75 279 aaKnown RBP10.08□□□□□ -0.8
USP40-205ENST00000430158 SLIRPQ9GZT3 109 aaKnown RBP10.08□□□□□ -0.8
USP40-205ENST00000430158 MS4A7Q9GZW8 240 aaPredicted RBP10.08□□□□□ -0.8
USP40-205ENST00000430158 NXF2Q9GZY0 626 aaKnown RBP10.08□□□□□ -0.8
USP40-205ENST00000430158 TAF9BQ9HBM6 251 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 ESM1Q9NQ30 184 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 GFOD1Q9NXC2 390 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 CCDC59Q9P031 241 aaKnown RBP10.08□□□□□ -0.8
USP40-205ENST00000430158 TRAPPC2LQ9UL33 140 aa10.08□□□□□ -0.8
USP40-205ENST00000430158 IGKV1-6A0A0C4DH72 117 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 MDFIC2A0A1B0GVS7 189 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 DPPA5A6NC42 116 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 LY6LH3BQJ8 138 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 XRCC3O43542 346 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 SCGNO76038 276 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 APOA1P02647 267 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 OR52W1Q6IF63 320 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 Q6ZS49 121 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 MOB1BQ7L9L4 216 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 LHFPL4Q7Z7J7 247 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 ABHD12Q8N2K0 398 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 SIGLECL1Q8N7X8 197 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 ZNF439Q8NDP4 499 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 BEND2Q8NDZ0 799 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 OR13D1Q8NGV5 346 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 CLEC7AQ9BXN2 247 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 MIXL1Q9H2W2 232 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 AUNIPQ9H7T9 357 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 C12orf4Q9NQ89 552 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 ZNRD1Q9P1U0 126 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 COMMD3Q9UBI1 195 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 PSG11Q9UQ72 335 aa10.07□□□□□ -0.8
USP40-205ENST00000430158 A0A075B6Q4 140 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 TRAV18A0A075B6X5 111 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 IGKV1D-8A0A087WSZ0 117 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 FAM172BPA6NC97 362 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 TMEM235A6NFC5 223 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 CTDSP2O14595 271 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 HPGDSO60760 199 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 VENTXO95231 258 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 HLA-DQB1P01920 261 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 FCGR3AP08637 254 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 ELK1P19419 428 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 ZNF134P52741 427 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 HILS1P60008 231 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 HTD2P86397 168 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 ARL6IP1Q15041 203 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 SRSF7Q16629 238 aaKnown RBP eCLIP10.06□□□□□ -0.8
USP40-205ENST00000430158 PNLIPRP3Q17RR3 467 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 LY6G6FQ5SQ64 297 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 Q6YL49 198 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 LDLRAD3Q86YD5 345 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 LINC00311Q8N616 119 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 ZDHHC22Q8N966 263 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 C8orf31Q8N9H6 132 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 LEAP2Q969E1 77 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 MEGF9Q9H1U4 602 aa10.06□□□□□ -0.8
USP40-205ENST00000430158 RSL24D1Q9UHA3 163 aaKnown RBP10.06□□□□□ -0.8
USP40-205ENST00000430158 IGHV3-43A0A0B4J1X8 118 aa10.05□□□□□ -0.8
USP40-205ENST00000430158 SMIM31A0A1B0GVY4 71 aa10.05□□□□□ -0.8
USP40-205ENST00000430158 MEIOCA2RUB1 952 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms