RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 RPL24P83731 157 aaKnown RBP13.43□□□□□ -0.26
PTPRF-206ENST00000429895 SPRED2Q7Z698 418 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 TMEM191AQ9H0A3 160 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 DOCK2Q92608 1830 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 UPK3AO75631 287 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 HMGA2P52926 109 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 EWSR1Q01844 656 aaKnown RBP eCLIP13.43□□□□□ -0.26
PTPRF-206ENST00000429895 LY6EQ16553 131 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 BVESQ8NE79 360 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 C16orf92Q96LL3 132 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 GHITMQ9H3K2 345 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 IER3P46695 156 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 TEPPQ6URK8 271 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 NUP37Q8NFH4 326 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 ZNF721Q8TF20 911 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 PTX4Q96A99 478 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 TCRBV16S1A1N1A0A5B0 115 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 FAM181BA6NEQ2 426 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 TMPRSS3P57727 454 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 TMEM52Q8NDY8 209 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 OR1N2Q8NGR9 330 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 RGP1Q92546 391 aaPredicted RBP13.43□□□□□ -0.26
PTPRF-206ENST00000429895 C10orf35Q96D05 121 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 ANAPC16Q96DE5 110 aa13.43□□□□□ -0.26
PTPRF-206ENST00000429895 OGG1O15527 345 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 CD160O95971 181 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 PEBP1P30086 187 aaKnown RBP13.42□□□□□ -0.26
PTPRF-206ENST00000429895 DLK1P80370 383 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 SF3B6Q9Y3B4 125 aaKnown RBP13.42□□□□□ -0.26
PTPRF-206ENST00000429895 TM4SF20Q53R12 229 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 NCMAPQ5T1S8 102 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 OR2V2Q96R30 315 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 ASCC3Q8N3C0 2202 aaKnown RBP13.42□□□□□ -0.26
PTPRF-206ENST00000429895 TJP1Q07157 1748 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 K7N7A8 449 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 CORTO00230 105 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 RNASE1P07998 156 aaKnown RBP13.42□□□□□ -0.26
PTPRF-206ENST00000429895 AWAT1Q58HT5 328 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 SLC35E3Q7Z769 313 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 ARL6IP6Q8N6S5 226 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 ADAT3Q96EY9 351 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-206ENST00000429895 CBY1Q9Y3M2 126 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 A0A1W2PPV9 198 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 SMAD7O15105 426 aaKnown RBP13.42□□□□□ -0.26
PTPRF-206ENST00000429895 APCSP02743 223 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 LGALSLQ3ZCW2 172 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-206ENST00000429895 C19orf54Q5BKX5 351 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 OVCH2Q7RTZ1 564 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 BET1LQ9NYM9 111 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 FAM216AQ8WUB2 273 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 PGLYRP3Q96LB9 341 aa13.42□□□□□ -0.26
PTPRF-206ENST00000429895 METTL1Q9UBP6 276 aaKnown RBP13.42□□□□□ -0.26
PTPRF-206ENST00000429895 SLC35B1P78383 322 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 ZNF658BQ4V348 819 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-206ENST00000429895 WDR54Q9H977 334 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 TRAV8-7A0A075B6U6 113 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 ZNF324O75467 553 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-206ENST00000429895 CXorf1O96002 111 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 COL13A1Q5TAT6 717 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-206ENST00000429895 ZNF738Q8NE65 137 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 MIEN1Q9BRT3 115 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 FUT9Q9Y231 359 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 IGHV3OR16-10A0A075B7F0 116 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 CISD1Q9NZ45 108 aaKnown RBP13.41□□□□□ -0.26
PTPRF-206ENST00000429895 PCMT1P22061 227 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 AMMECR1LQ6DCA0 310 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 HCP5Q6MZN7 132 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 METTL26Q96S19 204 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 TBX15Q96SF7 602 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 PAXXQ9BUH6 204 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 SS18L1O75177 396 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-206ENST00000429895 NUBP1P53384 320 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 VAX2Q9UIW0 290 aa13.41□□□□□ -0.26
PTPRF-206ENST00000429895 TNRC6CQ9HCJ0 1690 aaKnown RBP13.4□□□□□ -0.26
PTPRF-206ENST00000429895 LRRC75BQ2VPJ9 315 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 POM121Q96HA1 1249 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 RAB29O14966 203 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 FAM106CPP0CH98 169 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 NAT2P11245 290 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 LSMEM1Q8N8F7 131 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 ZNF502Q8TBZ5 544 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 PHYHIPLQ96FC7 376 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 ABHD14BQ96IU4 210 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 H7C2G1 150 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 DEDDO75618 318 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 UCP2P55851 309 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 PMS2CLQ68D20 193 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 SLC25A42Q86VD7 318 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 NFAM1Q8NET5 270 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-206ENST00000429895 OR10J6PQ8NGY7 276 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 ZNF519Q8TB69 540 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 MS4A3Q96HJ5 214 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 HSF4Q9ULV5 492 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 ZNF735P0CB33 412 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 ZPLD1Q8TCW7 415 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 MYO7AQ13402 2215 aa13.4□□□□□ -0.26
PTPRF-206ENST00000429895 A0A0J9YW62 118 aa13.4□□□□□ -0.27
PTPRF-206ENST00000429895 DHRS7CA6NNS2 312 aa13.4□□□□□ -0.27
PTPRF-206ENST00000429895 IGF2P01344 180 aa13.4□□□□□ -0.27
PTPRF-206ENST00000429895 IGHV4-34P06331 123 aa13.4□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms