RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 ANKRD55Q3KP44 614 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 SSX8Q7RTT4 187 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 SLC36A1Q7Z2H8 476 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 LDLRAD3Q86YD5 345 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 OR11H4Q8NGC9 324 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 OR13G1Q8NGZ3 307 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 VSTM2LQ96N03 204 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 TP53RKQ96S44 253 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 PCM1Q15154 2024 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 EIF3GO75821 320 aaKnown RBP eCLIP12.68□□□□□ -0.38
PTPRU-204ENST00000428026 TNXAQ16473 311 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 ZNF362Q5T0B9 420 aaPredicted RBP12.68□□□□□ -0.38
PTPRU-204ENST00000428026 STPG1Q5TH74 334 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 TLNRD1Q9H1K6 362 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 FAM157AC9JC47 383 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 EML2O95834 649 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 PGA4P0DJD7 388 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 PGA5P0DJD9 388 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 OR2M3Q8NG83 312 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 CCL17Q92583 94 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 CORTO00230 105 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 PDE6DO43924 150 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 STARD6P59095 220 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 OR6X1Q8NH79 312 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 SEBOXQ9HB31 216 aaPredicted RBP12.68□□□□□ -0.38
PTPRU-204ENST00000428026 TREM2Q9NZC2 230 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 NPTNQ9Y639 398 aa12.68□□□□□ -0.38
PTPRU-204ENST00000428026 OR4C46A6NHA9 309 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 CRXO43186 299 aaPredicted RBP12.67□□□□□ -0.38
PTPRU-204ENST00000428026 SPTA1P02549 2419 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 TMSB15BA0A087X1C1 80 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 APELAP0DMC3 54 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 WNT5AP41221 380 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 FAM3BP58499 235 aaPredicted RBP12.67□□□□□ -0.38
PTPRU-204ENST00000428026 SRSF9Q13242 221 aaKnown RBP eCLIP12.67□□□□□ -0.38
PTPRU-204ENST00000428026 OR5A2Q8NGI9 324 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 CLN8Q9UBY8 286 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 TGIF2-C20orf24A0A0A6YYL0 155 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 HLA-DQB1P01920 261 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 OR4S2Q8NH73 311 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 SMPD2O60906 423 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 BMI1P35226 326 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 KIR2DS2P43631 304 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 ID4P47928 161 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 CD81P60033 236 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 MRPS11P82912 194 aaKnown RBP12.67□□□□□ -0.38
PTPRU-204ENST00000428026 KHDC3LQ587J8 217 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 SFTPA2Q8IWL1 248 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 MYOZ1Q9NP98 299 aaPredicted RBP12.67□□□□□ -0.38
PTPRU-204ENST00000428026 LHX9Q9NQ69 397 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 ZNF107Q9UII5 783 aaPredicted RBP12.67□□□□□ -0.38
PTPRU-204ENST00000428026 OR2T8A6NH00 312 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 WDR25Q64LD2 544 aaPredicted RBP12.67□□□□□ -0.38
PTPRU-204ENST00000428026 ZNF343Q6P1L6 599 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.67□□□□□ -0.38
PTPRU-204ENST00000428026 CTXND1A0A1B0GTU2 59 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 A0A1W2PRD5 423 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 A0A1W2PRF3 423 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 A0A1W2PRM7 423 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 K7ESF4 209 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 CDS2O95674 445 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 BCL2P10415 239 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 HOXA6P31267 233 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 NMUP48645 174 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 MMP16P51512 607 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 Q5BKY6 102 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 WDR74Q6RFH5 385 aaPredicted RBP12.66□□□□□ -0.38
PTPRU-204ENST00000428026 RSG1Q9BU20 258 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 APC2O95996 2303 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 TRAV17A0A0B4J275 112 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 K7ERU9 68 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 CDIPTO14735 213 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 CYB5R2Q6BCY4 276 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 WFIKKN1Q96NZ8 548 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 PCGF1Q9BSM1 259 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 A0A1B0GV90 55 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 ORM1P02763 201 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 DDTP30046 118 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 KIR3DL2P43630 455 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 LOC389332A0A1B0GUA5 103 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 LIPT2A6NK58 231 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 SLC23A3Q6PIS1 610 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 OR51M1Q9H341 326 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 AKIRIN1Q9H9L7 192 aaPredicted RBP12.66□□□□□ -0.38
PTPRU-204ENST00000428026 RALYQ9UKM9 306 aaKnown RBP12.66□□□□□ -0.38
PTPRU-204ENST00000428026 KCNK7Q9Y2U2 307 aa12.66□□□□□ -0.38
PTPRU-204ENST00000428026 SP9P0CG40 484 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 SSPNQ14714 243 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 COX19Q49B96 90 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 SPATA45Q537H7 98 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 ZNF766Q5HY98 468 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 TET1Q8NFU7 2136 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 H0YL77 283 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 DEDDO75618 318 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 WDFY1Q8IWB7 410 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 CT55Q8WUE5 264 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 TM4SF19Q96DZ7 209 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 GPR61Q9BZJ8 451 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 ZNF638Q14966 1978 aaKnown RBP12.65□□□□□ -0.38
PTPRU-204ENST00000428026 SCN10AQ9Y5Y9 1956 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms