RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TCRBV21S2A2A0A5A6 115 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 HPRT1P00492 218 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 IRF2P14316 349 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 SRP14P37108 136 aaKnown RBP9.16□□□□□ -0.94
USP54-204ENST00000422491 ANKRD39Q53RE8 183 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 PRR18Q8N4B5 295 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 NFAM1Q8NET5 270 aaPredicted RBP9.16□□□□□ -0.94
USP54-204ENST00000422491 GPR146Q96CH1 333 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 OR7C1O76099 320 aaPredicted RBP9.16□□□□□ -0.94
USP54-204ENST00000422491 NRASP01111 189 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 IGKV1D-33P01593 117 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 IGKV1-33P01594 117 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 SCTP09683 121 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 SLC25A6P12236 298 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 WNT5AP41221 380 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 RPL15P61313 204 aaKnown RBP9.16□□□□□ -0.94
USP54-204ENST00000422491 RPP25LQ8N5L8 163 aaKnown RBP9.16□□□□□ -0.94
USP54-204ENST00000422491 MRPL30Q8TCC3 161 aaKnown RBP9.16□□□□□ -0.94
USP54-204ENST00000422491 LHX4Q969G2 390 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 PINX1Q96BK5 328 aaKnown RBP9.16□□□□□ -0.94
USP54-204ENST00000422491 IMMP2LQ96T52 175 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 PLK3Q9H4B4 646 aa9.16□□□□□ -0.94
USP54-204ENST00000422491 CNOT4O95628 575 aaKnown RBP9.15□□□□□ -0.94
USP54-204ENST00000422491 VEGFBP49765 207 aa9.15□□□□□ -0.94
USP54-204ENST00000422491 TMEM240Q5SV17 173 aa9.15□□□□□ -0.94
USP54-204ENST00000422491 KIAA0895LQ68EN5 471 aa9.15□□□□□ -0.94
USP54-204ENST00000422491 ZNF705AQ6ZN79 300 aaPredicted RBP9.15□□□□□ -0.94
USP54-204ENST00000422491 Q6ZRM9 215 aa9.15□□□□□ -0.94
USP54-204ENST00000422491 TMEM256Q8N2U0 113 aa9.15□□□□□ -0.94
USP54-204ENST00000422491 OR2M3Q8NG83 312 aa9.15□□□□□ -0.94
USP54-204ENST00000422491 ZNF385AQ96PM9 386 aaKnown RBP9.15□□□□□ -0.94
USP54-204ENST00000422491 WDR61Q9GZS3 305 aaKnown RBP9.15□□□□□ -0.94
USP54-204ENST00000422491 GON4LQ3T8J9 2241 aa9.15□□□□□ -0.94
USP54-204ENST00000422491 A0A1B0GUS0 222 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 A0A1B0GX78 115 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 DHHO43323 396 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 NUPR1O60356 82 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 YPEL1O60688 119 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 PGLYRP1O75594 196 aaPredicted RBP9.15□□□□□ -0.95
USP54-204ENST00000422491 DRD1P21728 446 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 BRS3P32247 399 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 PLA2G5P39877 138 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 HNRNPKP61978 463 aaKnown RBP eCLIP9.15□□□□□ -0.95
USP54-204ENST00000422491 LCN2P80188 198 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 TLE1Q04724 770 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 SRSF7Q16629 238 aaKnown RBP eCLIP9.15□□□□□ -0.95
USP54-204ENST00000422491 IZUMO4Q1ZYL8 232 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 EXTL1Q92935 676 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 YPEL2Q96QA6 119 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 RASL10BQ96S79 203 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 TBX15Q96SF7 602 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 DIRC2Q96SL1 478 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 RBM24Q9BX46 236 aaKnown RBP9.15□□□□□ -0.95
USP54-204ENST00000422491 PARD6GQ9BYG4 376 aaPredicted RBP9.15□□□□□ -0.95
USP54-204ENST00000422491 OPN3Q9H1Y3 402 aaPredicted RBP9.15□□□□□ -0.95
USP54-204ENST00000422491 LPAR2Q9HBW0 351 aa9.15□□□□□ -0.95
USP54-204ENST00000422491 IGKV1-6A0A0C4DH72 117 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 LILRA1O75019 489 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 NAPSAO96009 420 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 GYPAP02724 150 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 F2RP25116 425 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 IL3RAP26951 378 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 CCR5P51681 352 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 ARSJQ5FYB0 599 aaPredicted RBP9.14□□□□□ -0.95
USP54-204ENST00000422491 OR10G3Q8NGC4 313 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 ZCCHC14Q8WYQ9 949 aaKnown RBP9.14□□□□□ -0.95
USP54-204ENST00000422491 ZNF837Q96EG3 531 aaPredicted RBP9.14□□□□□ -0.95
USP54-204ENST00000422491 KLHDC7BQ96G42 594 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 MS4A10Q96PG2 267 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 C20orf144Q9BQM9 153 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 UBE2ZQ9H832 354 aaPredicted RBP9.14□□□□□ -0.95
USP54-204ENST00000422491 SLC39A9Q9NUM3 307 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 GALR2O43603 387 aaPredicted RBP9.14□□□□□ -0.95
USP54-204ENST00000422491 SYNGR3O43761 229 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 FUT6P51993 359 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 FAM180AQ6UWF9 173 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 CALHM1Q8IU99 346 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 BATF2Q8N1L9 274 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 METTL7AQ9H8H3 244 aa9.14□□□□□ -0.95
USP54-204ENST00000422491 SYNGR2O43760 224 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 LCATP04180 440 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 IAPPP10997 89 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 PSMB3P49720 205 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 TRIM61Q5EBN2 209 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 FAM27BQ5VT28 67 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 C17orf82Q86X59 251 aaPredicted RBP9.13□□□□□ -0.95
USP54-204ENST00000422491 SDSLQ96GA7 329 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 OR4C12Q96R67 309 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 MIEN1Q9BRT3 115 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 GPR35Q9HC97 309 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 PSENENQ9NZ42 101 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 TRBV11-1A0A0K0K1C0 115 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 ZNF705FA8MVS1 300 aaPredicted RBP9.13□□□□□ -0.95
USP54-204ENST00000422491 TNFSF13O75888 250 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 ZNF705DP0CH99 300 aaPredicted RBP9.13□□□□□ -0.95
USP54-204ENST00000422491 ZNF705BP0CI00 300 aaPredicted RBP9.13□□□□□ -0.95
USP54-204ENST00000422491 SELEP16581 610 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 GCH1P30793 250 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 HBG1P69891 147 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 HBG2P69892 147 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms