RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CMTM3Q96MX0 182 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 PRSS22Q9GZN4 317 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 GLS2Q9UI32 602 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 ST3GAL6Q9Y274 331 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 ETV7Q9Y603 341 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 A0A075B6Q4 140 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 A0A0B4J203 849 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 A0A1W2PP11 408 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 SH2D1BO14796 132 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 MMP23AO75900 390 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 TK1P04183 234 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 SNRPBP14678 240 aaKnown RBP10.31□□□□□ -0.76
LINC00339-202ENST00000416769 MGMTP16455 207 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 VDAC2P45880 294 aaPredicted RBP10.31□□□□□ -0.76
LINC00339-202ENST00000416769 COL10A1Q03692 680 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 UNC119Q13432 240 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 ARSJQ5FYB0 599 aaPredicted RBP10.31□□□□□ -0.76
LINC00339-202ENST00000416769 ZNF626Q68DY1 528 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 OR10K2Q6IF99 312 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 LINC00596Q86U02 117 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 ZNF561Q8N587 486 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 TMEM104Q8NE00 496 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 URM1Q9BTM9 101 aaKnown RBP10.31□□□□□ -0.76
LINC00339-202ENST00000416769 TM2D1Q9BX74 207 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 BANF2Q9H503 90 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 IL36RNQ9UBH0 155 aa10.31□□□□□ -0.76
LINC00339-202ENST00000416769 TMEM82A0PJX8 343 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A10PA6NDY2 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A18PA6NE21 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A16PA6NEW6 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A20PA6NIJ5 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A7PA6NKC0 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A22PA8MWA6 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A12PA8MX19 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A5PA8MXJ8 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A23PA8MXZ1 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 H3BUI4 141 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 ZNF737O75373 536 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 PEX14O75381 377 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 CHRM2P08172 466 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A15PP0C7V4 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A13PP0C7W8 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A14PP0C7W9 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM90A24PP0C7X0 464 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 PF4V1P10720 104 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 LMO1P25800 156 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 RBM11P57052 281 aaKnown RBP10.3□□□□□ -0.76
LINC00339-202ENST00000416769 RPS27AP62979 156 aaKnown RBP10.3□□□□□ -0.76
LINC00339-202ENST00000416769 MPV17LQ2QL34 196 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 UTF1Q5T230 341 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 Q6P435 159 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM89BQ8N5H3 189 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 ASCC1Q8N9N2 400 aaKnown RBP10.3□□□□□ -0.76
LINC00339-202ENST00000416769 OR5H6Q8NGV6 325 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM46BQ96A09 425 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 Q96M66 194 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 TMEM59Q9BXS4 323 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 SELENOIQ9C0D9 397 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 SLIRPQ9GZT3 109 aaKnown RBP10.3□□□□□ -0.76
LINC00339-202ENST00000416769 NXF2Q9GZY0 626 aaKnown RBP10.3□□□□□ -0.76
LINC00339-202ENST00000416769 LPAR5Q9H1C0 372 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 KCNK15Q9H427 330 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.3□□□□□ -0.76
LINC00339-202ENST00000416769 ABCB10Q9NRK6 738 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 A3GALT2U3KPV4 340 aa10.3□□□□□ -0.76
LINC00339-202ENST00000416769 FAM172BPA6NC97 362 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 METTL21EPA6NDL7 271 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 F2RL2O00254 374 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 DEGS1O15121 323 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 IGHV1-8P0DP01 117 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 EDDM3BP56851 147 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 EDDM3AQ14507 147 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 PIGYQ3MUY2 71 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 C18orf65Q6ZTR6 163 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 OR11H6Q8NGC7 330 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 LGALS14Q8TCE9 139 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 MALSU1Q96EH3 234 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 DCUN1D5Q9BTE7 237 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 ABCG5Q9H222 651 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 IFT22Q9H7X7 185 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 COMMD3Q9UBI1 195 aa10.29□□□□□ -0.76
LINC00339-202ENST00000416769 TBL2Q9Y4P3 447 aaKnown RBP10.29□□□□□ -0.76
LINC00339-202ENST00000416769 TCRBV4S1A1TA0A5B7 111 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 K7N7A8 449 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 GEMIN2O14893 280 aaKnown RBP10.28□□□□□ -0.76
LINC00339-202ENST00000416769 OR2H2O95918 312 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 HAND1O96004 215 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 PF4P02776 101 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 LPLP06858 475 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 ZNF728P0DKX0 622 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 DUSP1P28562 367 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 SNU13P55769 128 aaKnown RBP10.28□□□□□ -0.76
LINC00339-202ENST00000416769 PLA2G7Q13093 441 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 CNPY1Q3B7I2 92 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 ETV3LQ6ZN32 361 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 CHST4Q8NCG5 386 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 MCFD2Q8NI22 146 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 SNX22Q96L94 193 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 CHST6Q9GZX3 395 aa10.28□□□□□ -0.76
LINC00339-202ENST00000416769 A0A0A6YYH2 397 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms