RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TMEM210A6NLX4 147 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 LINC00587B1AMM8 73 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 DISC1C4P0D8 188 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 ZNF670-ZNF695F2Z2N8 137 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 TSTD3H0UI37 97 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 H3BN98 237 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 AZIN1O14977 448 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 SNAI2O43623 268 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 CHP2O43745 196 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 SSNA1O43805 119 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 KLK1P06870 262 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 GABRG2P18507 467 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 OGNP20774 298 aaKnown RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 MIPP30301 263 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 SLC6A1P30531 599 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 PMELP40967 661 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 EVX1P49640 407 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 CDC42P60953 191 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 HNRNPA1L2Q32P51 320 aaKnown RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 LGALSLQ3ZCW2 172 aaPredicted RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 ATP6AP1LQ52LC2 224 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 SAPCD1Q5SSQ6 148 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 IDNKQ5T6J7 187 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 TBPL2Q6SJ96 375 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 TPGS1Q6ZTW0 290 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 LINC00336Q6ZUF6 198 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 FUNDC1Q8IVP5 155 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 SPICQ8N5J4 248 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 GPR26Q8NDV2 337 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 TMEM161BQ8NDZ6 487 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 PXT1Q8NFP0 134 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 OR10G2Q8NGC3 310 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 OR51L1Q8NGJ5 315 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 OR8D4Q8NGM9 314 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 OR5J2Q8NH18 312 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 ZNF461Q8TAF7 563 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 MITD1Q8WV92 249 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 PTX4Q96A99 478 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 CPB2Q96IY4 423 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 LINC00052Q96N35 136 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 RBP7Q96R05 134 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 ZNF382Q96SR6 550 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 TSNAXQ99598 290 aaKnown RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 KCNS3Q9BQ31 491 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 AGMATQ9BSE5 352 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 REG4Q9BYZ8 158 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 METTL9Q9H1A3 318 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 SLC38A1Q9H2H9 487 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 DHX35Q9H5Z1 703 aaKnown RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 TUBA4BQ9H853 241 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 CACYBPQ9HB71 228 aaKnown RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 EXOSC4Q9NPD3 245 aaKnown RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 SMCO4Q9NRQ5 59 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 METTL1Q9UBP6 276 aaKnown RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 KLK12Q9UKR0 248 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 KPTNQ9Y664 436 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 V9GYH0 126 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 TIAM2Q8IVF5 1701 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 TRAV19A0A0A6YYK7 116 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 SNRPGP15A8MWD9 76 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 C5orf58C9J3I9 102 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 M0QZK8 103 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 DFFAO00273 331 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 CXCR6O00574 342 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 TCAPO15273 167 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 PLA2G10O15496 165 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 TGOLN2O43493 480 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 CHST10O43529 356 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 FADS1O60427 444 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 GGCTO75223 188 aaKnown RBP2.91□□□□□ -1.94
VPS54-204ENST00000416400 ATG12O94817 140 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 IFNA17P01571 189 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 MT-ND4LP03901 98 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 UBBP0CG47 229 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 PPIBP23284 216 aaKnown RBP2.91□□□□□ -1.94
VPS54-204ENST00000416400 S100A2P29034 98 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 CRABP1P29762 137 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 S100A11P31949 105 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 GGT2P36268 569 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 CSKP41240 450 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 CDKN2CP42773 168 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 RBP2P50120 134 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 CTBP2P56545 445 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 TAS2R46P59540 309 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 PKIAP61925 76 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 CACNG7P62955 275 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 UBA52P62987 128 aaKnown RBP2.91□□□□□ -1.94
VPS54-204ENST00000416400 SYCNQ0VAF6 134 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 ST3GAL4Q11206 333 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 MLLT11Q13015 90 aaPredicted RBP2.91□□□□□ -1.94
VPS54-204ENST00000416400 PEA15Q15121 130 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 SPIN4Q56A73 249 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 PTRHD1Q6GMV3 140 aaKnown RBP2.91□□□□□ -1.94
VPS54-204ENST00000416400 LAIR2Q6ISS4 152 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 TMEM205Q6UW68 189 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 AHSA2Q719I0 299 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 SLC35D2Q76EJ3 337 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 PID1Q7Z2X4 250 aa2.91□□□□□ -1.94
VPS54-204ENST00000416400 MRPL52Q86TS9 123 aaKnown RBP2.91□□□□□ -1.94
VPS54-204ENST00000416400 SAXO1Q8IYX7 474 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms