RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 HMGN3Q15651 99 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 SMIM21Q3B7S5 101 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 SP6Q3SY56 376 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 IL34Q6ZMJ4 242 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 ZNF818PQ6ZRF7 136 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 RBMXL3Q8N7X1 1067 aaKnown RBP11.49□□□□□ -0.57
LIMS1-205ENST00000410093 SLC35G3Q8N808 338 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 OR10V1Q8NGI7 309 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 FAM57AQ8TBR7 257 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 PCNPQ8WW12 178 aaKnown RBP11.49□□□□□ -0.57
LIMS1-205ENST00000410093 ARL11Q969Q4 196 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 ZNF488Q96MN9 340 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 TP53RKQ96S44 253 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 TOLLIPQ9H0E2 274 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 TAF9BQ9HBM6 251 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 TAS2R3Q9NYW6 316 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 SPTA1P02549 2419 aa11.49□□□□□ -0.57
LIMS1-205ENST00000410093 ZNF462Q96JM2 2506 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 BOD1L1Q8NFC6 3051 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 IGKV1-6A0A0C4DH72 117 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 A0A1W2PR80 420 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 HAND1O96004 215 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 F2RP25116 425 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 CEACAM8P31997 349 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-205ENST00000410093 MPV17P39210 176 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 TLE1Q04724 770 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 SEM1Q6ZVN7 128 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 SELENOHQ8IZQ5 122 aaKnown RBP11.48□□□□□ -0.57
LIMS1-205ENST00000410093 BATF2Q8N1L9 274 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 RELL2Q8NC24 303 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-205ENST00000410093 OR11L1Q8NGX0 322 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 SLC25A31Q9H0C2 315 aa11.48□□□□□ -0.57
LIMS1-205ENST00000410093 OPN3Q9H1Y3 402 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-205ENST00000410093 FAM212BQ9NTI7 297 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-205ENST00000410093 LSM5Q9Y4Y9 91 aaKnown RBP11.48□□□□□ -0.57
LIMS1-205ENST00000410093 OOEPA6NGQ2 149 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 MSGN1A6NI15 193 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 HSPB6O14558 160 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 MLNRO43193 412 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 PGLYRP1O75594 196 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-205ENST00000410093 AGFG2O95081 481 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 CRYAAP02489 173 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 GRPP07492 148 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 ZNF250P15622 560 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 GLRXP35754 106 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 NKX2-1P43699 371 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-205ENST00000410093 RAB5CP51148 216 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 ERVS71-1P61550 626 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 TCTEX1D1Q8N7M0 179 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 LSM10Q969L4 123 aaKnown RBP11.47□□□□□ -0.57
LIMS1-205ENST00000410093 ARV1Q9H2C2 271 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 LIN7CQ9NUP9 197 aaKnown RBP11.47□□□□□ -0.57
LIMS1-205ENST00000410093 LPAR3Q9UBY5 353 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 TINAGQ9UJW2 476 aa11.47□□□□□ -0.57
LIMS1-205ENST00000410093 INTS1Q8N201 2190 aaKnown RBP11.47□□□□□ -0.57
LIMS1-205ENST00000410093 A0A1B0GU03 582 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 ZNHIT1O43257 154 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 IGHV3-13P01766 116 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 HEXAP06865 529 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 SEC11BP0C7V7 166 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 TMEM33P57088 247 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 MEX3BQ6ZN04 569 aaKnown RBP11.46□□□□□ -0.57
LIMS1-205ENST00000410093 ACP7Q6ZNF0 438 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 C20orf204Q6ZNR8 217 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 PPP1R35Q8TAP8 253 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 SMIM8Q96KF7 97 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 LURAP1Q96LR2 239 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 PLEKHF2Q9H8W4 249 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 MMP26Q9NRE1 261 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 CCL28Q9NRJ3 127 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 FAM215AQ9Y5M1 114 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 BSNQ9UPA5 3926 aa11.46□□□□□ -0.57
LIMS1-205ENST00000410093 IGKV1D-13A0A0B4J2D9 117 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 SIRPB1O00241 398 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 HSPA12AO43301 675 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 ATG12O94817 140 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 SCGB1D2O95969 90 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 SERPINE2P07093 398 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 FAM157CP0CG43 387 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 IGKV1-13P0DP09 117 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 RCC1P18754 421 aaPredicted RBP11.45□□□□□ -0.58
LIMS1-205ENST00000410093 SULT1A2P50226 295 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 SELENOVP59797 346 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 BAXQ07812 192 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 NMSQ5H8A3 153 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 FAM74A1Q5RGS3 127 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 WDR82Q6UXN9 313 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 FOXRED2Q8IWF2 684 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 C11orf53Q8IXP5 236 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 COMMD1Q8N668 190 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 LHFPL5Q8TAF8 219 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 GALMQ96C23 342 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 NCOR1P1Q9H4R4 102 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 RAB9BQ9NP90 201 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 ELOVL5Q9NYP7 299 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 FBXL17Q9UF56 701 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 ERRFI1Q9UJM3 462 aaPredicted RBP11.45□□□□□ -0.58
LIMS1-205ENST00000410093 PRRG2O14669 202 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 HSD17B6O14756 317 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 WISP2O76076 250 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms