RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 OR5AS1Q8N127 324 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 ASB10Q8WXI3 467 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 FGF14Q92915 247 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 MRGPRFQ96AM1 343 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 CXorf51AA0A1B0GTR3 108 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 FRG2CA6NGY1 282 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 TMEM210A6NLX4 147 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 ERVK-16P61578 105 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 SERF2P84101 59 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 RPEL1Q2QD12 228 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 CYP2G1PQ6ZSU1 146 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.1□□□□□ -1.11
COL28A1-201ENST00000399429 GBGT1Q8N5D6 347 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 NOXO1Q8NFA2 376 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 TMEM222Q9H0R3 208 aa8.1□□□□□ -1.11
COL28A1-201ENST00000399429 THAP10Q9P2Z0 257 aaPredicted RBP8.1□□□□□ -1.11
COL28A1-201ENST00000399429 TSC2P49815 1807 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 CTXND1A0A1B0GTU2 59 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 SERF1AO75920 110 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 ACTL6BO94805 426 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 RPL23P62829 140 aaKnown RBP8.09□□□□□ -1.11
COL28A1-201ENST00000399429 TGIF2LYQ8IUE0 185 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 NUDT11Q96G61 164 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 CLDN16Q9Y5I7 305 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 TDRD15B5MCY1 1934 aaKnown RBP8.09□□□□□ -1.11
COL28A1-201ENST00000399429 A0A1B0GUS0 222 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 SHISA7A6NL88 538 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 GDF9O60383 454 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 OR7C2O60412 319 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 OTX1P32242 354 aaPredicted RBP8.09□□□□□ -1.11
COL28A1-201ENST00000399429 RIPPLY3P57055 190 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 FBLN7Q53RD9 439 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 SHISA5Q8N114 240 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 SPSB1Q96BD6 273 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 OR4C12Q96R67 309 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 FAM206AQ9NX38 181 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 POLR3KQ9Y2Y1 108 aaPredicted RBP8.09□□□□□ -1.11
COL28A1-201ENST00000399429 SPTA1P02549 2419 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 POLR2AP24928 1970 aaKnown RBP8.09□□□□□ -1.11
COL28A1-201ENST00000399429 IGKV1D-8A0A087WSZ0 117 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 BMPR1BO00238 502 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 HNRNPA1P09651 372 aaKnown RBP eCLIP8.09□□□□□ -1.11
COL28A1-201ENST00000399429 GPR3P46089 330 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 RSPO4Q2I0M5 234 aaPredicted RBP8.09□□□□□ -1.11
COL28A1-201ENST00000399429 FAM166AQ6J272 317 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 FAM122AQ96E09 287 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 TOX2Q96NM4 488 aa8.09□□□□□ -1.11
COL28A1-201ENST00000399429 GAGE10A6NGK3 116 aa8.09□□□□□ -1.12
COL28A1-201ENST00000399429 TNFSF13O75888 250 aa8.09□□□□□ -1.12
COL28A1-201ENST00000399429 CER1O95813 267 aa8.09□□□□□ -1.12
COL28A1-201ENST00000399429 HIST3H3Q16695 136 aa8.09□□□□□ -1.12
COL28A1-201ENST00000399429 MRPL43Q8N983 215 aaKnown RBP8.09□□□□□ -1.12
COL28A1-201ENST00000399429 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.09□□□□□ -1.12
COL28A1-201ENST00000399429 ST6GALNAC6Q969X2 333 aa8.09□□□□□ -1.12
COL28A1-201ENST00000399429 GPR27Q9NS67 375 aa8.09□□□□□ -1.12
COL28A1-201ENST00000399429 A0A0A6YYD4 124 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 DPRXA6NFQ7 191 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 CRYABP02511 175 aaKnown RBP8.08□□□□□ -1.12
COL28A1-201ENST00000399429 PSG2P11465 335 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 DRD3P35462 400 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 GNB2P62879 340 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 FUT7Q11130 342 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 PLPPR5Q32ZL2 321 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 OR8G5Q8NG78 346 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 DAZAP1Q96EP5 407 aaKnown RBP8.08□□□□□ -1.12
COL28A1-201ENST00000399429 RNF2Q99496 336 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 HIPK2Q9H2X6 1198 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 LIN7CQ9NUP9 197 aaKnown RBP8.08□□□□□ -1.12
COL28A1-201ENST00000399429 B3GAT1Q9P2W7 334 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 PILRAQ9UKJ1 303 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 SCN8AQ9UQD0 1980 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 ANKRD30BLA7E2S9 258 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 J3QR89 54 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 PATE4P0C8F1 98 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 LINC00114Q6XXX2 140 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 OR8I2Q8N0Y5 310 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 ST8SIA1Q92185 356 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 TECRQ9NZ01 308 aaKnown RBP8.08□□□□□ -1.12
COL28A1-201ENST00000399429 IL19Q9UHD0 177 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 TBL2Q9Y4P3 447 aaKnown RBP8.08□□□□□ -1.12
COL28A1-201ENST00000399429 RALGAPA2Q2PPJ7 1873 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 ALG1L2C9J202 215 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 UMODP07911 640 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 IL3RAP26951 378 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 SRYQ05066 204 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 DEFB133Q30KQ1 61 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 RIPPLY2Q5TAB7 128 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 RNF144BQ7Z419 303 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 OR4A16Q8NH70 328 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 ZBP1Q9H171 429 aa8.08□□□□□ -1.12
COL28A1-201ENST00000399429 DIDO1Q9BTC0 2240 aaKnown RBP8.07□□□□□ -1.12
COL28A1-201ENST00000399429 DEGS1O15121 323 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 SEMA4FO95754 770 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 CA3P07451 260 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 CISD3P0C7P0 127 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 GNG4P50150 75 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 DNM1P46Q6ZS02 220 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 NIT1Q86X76 327 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 FAM19A2Q8N3H0 131 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 OR13H1Q8NG92 308 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms