RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 OR10AC1Q8NH08 325 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 ITLN1Q8WWA0 313 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 OR2A7Q96R45 310 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 TMEM38BQ9NVV0 291 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 METTL1Q9UBP6 276 aaKnown RBP6.29□□□□□ -1.4
UPF2-203ENST00000397053 IGHV3OR16-10A0A075B7F0 116 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 HMX2A2RU54 273 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 SULT1A2P50226 295 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 C11orf91Q3C1V1 193 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 MEIG1Q5JSS6 88 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 LRP11Q86VZ4 500 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 GAPTQ8N292 157 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 GBGT1Q8N5D6 347 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 TPRX1Q8N7U7 411 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 MRGPRFQ96AM1 343 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 C10orf35Q96D05 121 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 MAP1LC3CQ9BXW4 147 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 TNFRSF12AQ9NP84 129 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 S1PR2O95136 353 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 PPYP01298 95 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 HLA-DRB3P79483 266 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 GABRA6Q16445 453 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 TMEM183BQ1AE95 376 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 ZNF519Q8TB69 540 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 ASB10Q8WXI3 467 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 CROCCQ5TZA2 2017 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 PPIAL4CA0A0B4J2A2 164 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 NDUFB6O95139 128 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 PPP1R17O96001 155 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 CTSDP07339 412 aaPredicted RBP6.29□□□□□ -1.4
UPF2-203ENST00000397053 SNRPCP09234 159 aaKnown RBP6.29□□□□□ -1.4
UPF2-203ENST00000397053 PPIAL4GP0DN37 164 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 RPL29P47914 159 aaKnown RBP6.29□□□□□ -1.4
UPF2-203ENST00000397053 CLDN20P56880 219 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 SNRPD3P62318 126 aaKnown RBP6.29□□□□□ -1.4
UPF2-203ENST00000397053 PRNTQ86SH4 94 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 LHFPL5Q8TAF8 219 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 RAB37Q96AX2 223 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 JMJD8Q96S16 334 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 SLC35B3Q9H1N7 401 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 PHLDA3Q9Y5J5 127 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 WNK2Q9Y3S1 2297 aa6.29□□□□□ -1.4
UPF2-203ENST00000397053 MYH3P11055 1940 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 NTN1O95631 604 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 TGFAP01135 160 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 THY1P04216 161 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 SFTA3P0C7M3 94 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 RPL34P49207 117 aaKnown RBP6.28□□□□□ -1.4
UPF2-203ENST00000397053 WDR25Q64LD2 544 aaPredicted RBP6.28□□□□□ -1.4
UPF2-203ENST00000397053 HCP5Q6MZN7 132 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 DNM1P46Q6ZS02 220 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 LDLRAD3Q86YD5 345 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 OR4X2Q8NGF9 303 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 OR2T10Q8NGZ9 312 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 YIPF6Q96EC8 236 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 TBX15Q96SF7 602 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 MIOXQ9UGB7 285 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 FOXD3Q9UJU5 478 aaPredicted RBP6.28□□□□□ -1.4
UPF2-203ENST00000397053 OR51B2Q9Y5P1 312 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 IGLV3-16A0A075B6K0 115 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 MPV17P39210 176 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 UCP2P55851 309 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 COL10A1Q03692 680 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 MANBALQ9NQG1 85 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 OR2W1Q9Y3N9 320 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.28□□□□□ -1.43e-8■■■■■ 40.2
UPF2-203ENST00000397053 LOC105371242A0A075B767 164 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 LOC102724200A0A096LPH7 203 aaPredicted RBP6.28□□□□□ -1.4
UPF2-203ENST00000397053 ISLRO14498 428 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 CTAG2O75638 210 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 NUBP1P53384 320 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 CIRBPQ14011 172 aaKnown RBP6.28□□□□□ -1.4
UPF2-203ENST00000397053 ZNF680Q8NEM1 530 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 PGLYRP3Q96LB9 341 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 TP53RKQ96S44 253 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 PAXXQ9BUH6 204 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 CHRNA10Q9GZZ6 450 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 RAXQ9Y2V3 346 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 LRRC37A3O60309 1634 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 TRPM6Q9BX84 2022 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 DHRS7CA6NNS2 312 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 H7C2G1 150 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 IGKV3-20P01619 116 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 CLDN18P56856 261 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 TWIST1Q15672 202 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 HLA-DRB5Q30154 266 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 GLDNQ6ZMI3 551 aaPredicted RBP6.28□□□□□ -1.4
UPF2-203ENST00000397053 BPIFA4PQ86YQ2 179 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 SPNS2Q8IVW8 549 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 BVESQ8NE79 360 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 OR13C6PQ8NH95 151 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 WNT2BQ93097 391 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 RHOVQ96L33 236 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 SH3BGRL3Q9H299 93 aa6.28□□□□□ -1.4
UPF2-203ENST00000397053 NUP214P35658 2090 aaPredicted RBP6.27□□□□□ -1.4
UPF2-203ENST00000397053 A0A1B0GVG6 124 aa6.27□□□□□ -1.41
UPF2-203ENST00000397053 TCRBV16S1A1N1A0A5B0 115 aa6.27□□□□□ -1.41
UPF2-203ENST00000397053 TMEM189A5PLL7 270 aa6.27□□□□□ -1.41
UPF2-203ENST00000397053 BTF3P20290 206 aaKnown RBP6.27□□□□□ -1.41
UPF2-203ENST00000397053 MFAP4P55083 255 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms