RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 HKR1P10072 659 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 DAOP14920 347 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 NOVA1P51513 510 aaKnown RBP8.28□□□□□ -1.08
COL6A3-204ENST00000392003 GPM6AP51674 278 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 UCP3P55916 312 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 SPIN3Q5JUX0 258 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 RPL7L1Q6DKI1 246 aaKnown RBP8.28□□□□□ -1.08
COL6A3-204ENST00000392003 LIAT1Q6ZQX7 453 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 COLCA1Q6ZS62 124 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 GALNT14Q96FL9 552 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 TMEM100Q9NV29 134 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 GAR1Q9NY12 217 aaKnown RBP8.28□□□□□ -1.08
COL6A3-204ENST00000392003 TUBD1Q9UJT1 453 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 NSG2Q9Y328 171 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 A0A1W2PPH5 198 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 CDRT15L2A8MXV6 281 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 M0QZ24 198 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 NKX2-8O15522 239 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 DEDDO75618 318 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 TK1P04183 234 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 SELEP16581 610 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 DUSP1P28562 367 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 RAB5CP51148 216 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 NDUFA6P56556 154 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 SRPXP78539 464 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 GAGE1Q13065 139 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 TMEM187Q14656 261 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 C3AR1Q16581 482 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF766Q5HY98 468 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 FBXW12Q6X9E4 464 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 IL34Q6ZMJ4 242 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 SAXO1Q8IYX7 474 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 NANOS1Q8WY41 292 aaKnown RBP8.28□□□□□ -1.08
COL6A3-204ENST00000392003 MOB3AQ96BX8 217 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 SMIM3Q9BZL3 60 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 HRH4Q9H3N8 390 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 LPAR3Q9UBY5 353 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF629Q9UEG4 869 aaPredicted RBP8.28□□□□□ -1.08
COL6A3-204ENST00000392003 FBXO24O75426 580 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 ACTL6AO96019 429 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 BCL3P20749 454 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 AADACP22760 399 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 NPBWR2P48146 333 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 CEACAM21Q3KPI0 293 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 OR1L6Q8NGR2 347 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 RCC2Q9P258 522 aaKnown RBP8.28□□□□□ -1.08
COL6A3-204ENST00000392003 UBE2J1Q9Y385 318 aaPredicted RBP8.28□□□□□ -1.08
COL6A3-204ENST00000392003 MED13Q9UHV7 2174 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 IL18BPO95998 194 aa8.27□□□□□ -1.08
COL6A3-204ENST00000392003 CRYABP02511 175 aaKnown RBP8.27□□□□□ -1.08
COL6A3-204ENST00000392003 GLI4P10075 376 aa8.27□□□□□ -1.08
COL6A3-204ENST00000392003 NME2P22392 152 aa8.27□□□□□ -1.08
COL6A3-204ENST00000392003 PJVKQ0ZLH3 352 aa8.27□□□□□ -1.08
COL6A3-204ENST00000392003 ADAMTS17Q8TE56 1095 aa8.27□□□□□ -1.08
COL6A3-204ENST00000392003 DNAJC4Q9NNZ3 241 aa8.27□□□□□ -1.08
COL6A3-204ENST00000392003 FBXL17Q9UF56 701 aa8.27□□□□□ -1.08
COL6A3-204ENST00000392003 MKRN2OSH3BPM6 223 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 ST8SIA3O43173 380 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 SLC25A17O43808 307 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 PPYP01298 95 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 GAPDHP04406 335 aaKnown RBP8.27□□□□□ -1.09
COL6A3-204ENST00000392003 CD82P27701 267 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 S100GP29377 79 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 PTTG1IPP53801 180 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 FGF12P61328 243 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 GNMTQ14749 295 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 OR2A2Q6IF42 318 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 LYZL2Q7Z4W2 148 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 OR5A2Q8NGI9 324 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 LIME1Q9H400 295 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 CEP250Q9BV73 2442 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 KIR2DS1A0A191URI9 304 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 AGPAT2O15120 278 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 KIR2DS4P43632 304 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 TMEM33P57088 247 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 KIR2DS1Q14954 304 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 MPV17LQ2QL34 196 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 SPIN2AQ99865 258 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 SPIN2BQ9BPZ2 258 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 PLK3Q9H4B4 646 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 C12orf49Q9H741 205 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 TMED3Q9Y3Q3 217 aa8.27□□□□□ -1.09
COL6A3-204ENST00000392003 CD300LBA8K4G0 201 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 MSTNO14793 375 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 CTXN2P0C2S0 81 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 TFPI2P48307 235 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 FOXG1P55316 489 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-204ENST00000392003 UBE2G2P60604 165 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF695Q8IW36 515 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 SECTM1Q8WVN6 248 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 RAB24Q969Q5 203 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 GSX1Q9H4S2 264 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-204ENST00000392003 FAM96BQ9Y3D0 163 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 CFAP54Q96N23 3096 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 ARID1AO14497 2285 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 TRGV5A0A0B4J1U4 118 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 NME2P1O60361 137 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 GPR137BO60478 399 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 HOXA5P20719 270 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 DEFB109BQ30KR1 87 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms