RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CHRNA10Q9GZZ6 450 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 K7N7A8 449 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 CDS2O95674 445 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 FAM53AQ6NSI3 398 aaPredicted RBP11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 CBLN3Q6UW01 205 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 C16orf92Q96LL3 132 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 ARAP2Q8WZ64 1704 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 CCL21O00585 134 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 CELA2BP08218 269 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 COL9A1P20849 921 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 UCNP55089 124 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 COL10A1Q03692 680 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 CLEC2AQ6UVW9 174 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 FAM106CPP0CH98 169 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 TMEM78Q5T7P6 136 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 OR4C12Q96R67 309 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 TMEM189A5PLL7 270 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 FFAR1O14842 300 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF205O95201 554 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 APELAP0DMC3 54 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 HOXA6P31267 233 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 HERPUD1Q15011 391 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 HIKESHIQ53FT3 197 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 TEX30Q5JUR7 227 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 C1orf185Q5T7R7 199 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 LSMEM1Q8N8F7 131 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 LRRC75AQ8NAA5 344 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 POM121Q96HA1 1249 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 PCGF1Q9BSM1 259 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 KIAA1217Q5T5P2 1943 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 MAS1LP35410 378 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 NAAAQ02083 359 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 PPIAL4EA0A075B759 164 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 PPIAL4DF5H284 164 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 CDC42EP2O14613 210 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 PPIAL4FP0DN26 164 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 MVDP53602 400 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 TM4SF20Q53R12 229 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF714Q96N38 554 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 IL19Q9UHD0 177 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 PPIAL4AQ9Y536 164 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 SCN3AQ9NY46 2000 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 HYPMO75409 117 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 HBZP02008 142 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 PSG2P11465 335 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 PIGYQ3MUY2 71 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 PTX4Q96A99 478 aa11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 MRPS16Q9Y3D3 137 aaKnown RBP11.2□□□□□ -0.62
CCDC88C-204ENST00000389857 PRF1P14222 555 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 ZG16BQ96DA0 208 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 FOCADQ5VW36 1801 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 AESQ08117 197 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 LGALSLQ3ZCW2 172 aaPredicted RBP11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 FBXW9Q5XUX1 488 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 ABHD1Q96SE0 405 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 OR2J1Q9GZK6 312 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 WDR54Q9H977 334 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 PITPNC1Q9UKF7 332 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 IGHV5-10-1A0A0J9YXX1 117 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 CA2P00918 260 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 PKIAP61925 76 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 STPG3Q8N7X2 389 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 PARP11Q9NR21 331 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 HPRT1P00492 218 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 OR4A5Q8NH83 315 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 COL25A1Q9BXS0 654 aaPredicted RBP11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 PRR13Q9NZ81 148 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 KIF13BQ9NQT8 1826 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 NKX2-6A6NCS4 301 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 COX6B1P14854 86 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 LIFP15018 202 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 NMUP48645 174 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 SIGIRRQ6IA17 410 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 VN1R4Q7Z5H5 301 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 BVESQ8NE79 360 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF519Q8TB69 540 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 OR2V2Q96R30 315 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 CHST5Q9GZS9 411 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 CACNA1CQ13936 2221 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 TRPM6Q9BX84 2022 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF502Q8TBZ5 544 aa11.19□□□□□ -0.62
CCDC88C-204ENST00000389857 H3BQ15 152 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 HOXD4P09016 255 aaPredicted RBP11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 BTF3P20290 206 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF137PP52743 207 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 RPL31P62899 125 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 NCMAPQ5T1S8 102 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 ABHD3Q8WU67 409 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 SF3B6Q9Y3B4 125 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 WDR25Q64LD2 544 aaPredicted RBP11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 MSRB3Q8IXL7 192 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 MRPL30Q8TCC3 161 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 PGLYRP3Q96LB9 341 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 SMIM6P0DI80 62 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 RNFT1Q5M7Z0 435 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 ZNF880Q6PDB4 577 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 GPR6P46095 362 aaPredicted RBP11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 ADAD2Q8NCV1 583 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 SMOC1Q9H4F8 434 aa11.18□□□□□ -0.62
CCDC88C-204ENST00000389857 WIPI2Q9Y4P8 454 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms