RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 IGHV3-43DP0DP04 118 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 EBI3Q14213 229 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 ACSM3Q53FZ2 586 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 SIGIRRQ6IA17 410 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 FAM53AQ6NSI3 398 aaPredicted RBP17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 C5orf56Q8N8D9 126 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 OR4X2Q8NGF9 303 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 MYDGFQ969H8 173 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 GHRLQ9UBU3 117 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 TRAPPC2LQ9UL33 140 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 LSM2Q9Y333 95 aaKnown RBP17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 PRKDCP78527 4128 aaKnown RBP17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 IGHV1-3A0A0C4DH29 117 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 A0A1W2PRX2 142 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 TCRBV4S1A1TA0A5B7 111 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 CCRL2O00421 344 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 CA11O75493 328 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 FUT3P21217 361 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 GP2P55259 537 aaKnown RBP17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 GABPB1Q06547 395 aaPredicted RBP17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 HNF4GQ14541 408 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 INSL4Q14641 139 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 TMEM30BQ3MIR4 351 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 C6orf183Q5T699 404 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 C10orf99Q6UWK7 81 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 OR4K15Q8NH41 348 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 RAB9BQ9NP90 201 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 SCN3BQ9NY72 215 aa17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 TSSC4Q9Y5U2 329 aaPredicted RBP17.22■□□□□ 0.35
CCDC28B-201ENST00000373602 H0YHG0 523 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 SPINT2O43291 252 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 VHLP40337 213 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 REG1BP48304 166 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 GPR50Q13585 617 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 SPHARQ15513 63 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 OXLD1Q5BKU9 147 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 TRAT1Q6PIZ9 186 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 MOB3BQ86TA1 216 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 ZNF439Q8NDP4 499 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 NRG4Q8WWG1 115 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 SGCDQ92629 289 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 ST6GALNAC6Q969X2 333 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 NOTCH3Q9UM47 2321 aa17.21■□□□□ 0.35
CCDC28B-201ENST00000373602 IL3RAP26951 378 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 AQP4P55087 323 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 SLC35A2P78381 396 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 IRF3Q14653 427 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 FAM27D1Q5T7N8 215 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 SLC25A48Q6ZT89 311 aaKnown RBP17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 LRRTM1Q86UE6 522 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 IZUMO1Q8IYV9 350 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 WFDC9Q8NEX5 89 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 OR1L1Q8NH94 360 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 PHYHIPQ92561 330 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 FAM46BQ96A09 425 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 EAF1Q96JC9 268 aaPredicted RBP17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 TMED9Q9BVK6 235 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 CST11Q9H112 138 aa17.2■□□□□ 0.34
CCDC28B-201ENST00000373602 UBE2QL1A1L167 161 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 SLC31A2O15432 143 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 PDCD6O75340 191 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 HBZP02008 142 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 UBBP0CG47 229 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 PF4V1P10720 104 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 RCC1P18754 421 aaPredicted RBP17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 C1orf100Q5SVJ3 147 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 GLT8D1Q68CQ7 371 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 RTN4IP1Q8WWV3 396 aaPredicted RBP17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 CYYR1Q96J86 154 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 MBNL3Q9NUK0 354 aaKnown RBP17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 GNG12Q9UBI6 72 aa17.19■□□□□ 0.34
CCDC28B-201ENST00000373602 IGHV3-72A0A0B4J1Y9 119 aa17.18■□□□□ 0.34
CCDC28B-201ENST00000373602 PSMB11A5LHX3 300 aa17.18■□□□□ 0.34
CCDC28B-201ENST00000373602 MPIG6BO95866 241 aa17.18■□□□□ 0.34
CCDC28B-201ENST00000373602 ZNF134P52741 427 aa17.18■□□□□ 0.34
CCDC28B-201ENST00000373602 ZNF137PP52743 207 aa17.18■□□□□ 0.34
CCDC28B-201ENST00000373602 MED22Q15528 200 aa17.18■□□□□ 0.34
CCDC28B-201ENST00000373602 RBM48Q5RL73 367 aaKnown RBP17.18■□□□□ 0.34
CCDC28B-201ENST00000373602 Q8N6K4 173 aa17.18■□□□□ 0.34
CCDC28B-201ENST00000373602 TPRKBQ9Y3C4 175 aa17.18■□□□□ 0.34
CCDC28B-201ENST00000373602 TGP01266 2768 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 IGHG2P01859 326 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 VSIG8P0DPA2 414 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 CD37P11049 281 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 SRMP19623 302 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 CD1BP29016 333 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 HSD17B12Q53GQ0 312 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 CT45A1Q5HYN5 189 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 STEAP3Q658P3 488 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 CEACAM19Q7Z692 300 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 ZNF554Q86TJ5 538 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 PRR18Q8N4B5 295 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 OR10V1Q8NGI7 309 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 OR2T10Q8NGZ9 312 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 CT45A3Q8NHU0 189 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 MRPL30Q8TCC3 161 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 CHPT1Q8WUD6 406 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 DUSP21Q9H596 190 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 TAF9BQ9HBM6 251 aa17.17■□□□□ 0.34
CCDC28B-201ENST00000373602 TXNL1O43396 289 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms