RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 RND2P52198 227 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 COL19A1Q14993 1142 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 PCSK4Q6UW60 755 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 OR2V1Q8NHB1 315 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 CA5BP1Q8WTZ4 195 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 IL22RA2Q969J5 263 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 PRDM14Q9GZV8 571 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 LRFN1Q9P244 771 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 SYNGR1O43759 233 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 IGFBP4P22692 258 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 RCC1LQ96I51 464 aaKnown RBP13.98□□□□□ -0.17
SDC4-201ENST00000372733 CACNG5Q9UF02 275 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 VPS13AQ96RL7 3174 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 A0A096LPE4 126 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 A0A1W2PPZ6 126 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 TRAPPC6AO75865 159 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 CNOT4O95628 575 aaKnown RBP13.97□□□□□ -0.17
SDC4-201ENST00000372733 SERPINE2P07093 398 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 CYC1P08574 325 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 FGF5P12034 268 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 PLA2G5P39877 138 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 TLE1Q04724 770 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 SRSF7Q16629 238 aaKnown RBP eCLIP13.97□□□□□ -0.17
SDC4-201ENST00000372733 RIPPLY2Q5TAB7 128 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 M1APQ8TC57 530 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 MRPL30Q8TCC3 161 aaKnown RBP13.97□□□□□ -0.17
SDC4-201ENST00000372733 SCGB1C1Q8TD33 95 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 DUSP23Q9BVJ7 150 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 CEBPZOSA8MTT3 80 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 PHOX2AO14813 284 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 PNRC1Q12796 327 aaPredicted RBP13.97□□□□□ -0.17
SDC4-201ENST00000372733 RNPS1Q15287 305 aaKnown RBP13.97□□□□□ -0.17
SDC4-201ENST00000372733 HAPLN4Q86UW8 402 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 ZDHHC23Q8IYP9 409 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 AGBL5Q8NDL9 886 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 RDH5Q92781 318 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 ADGRG7Q96K78 797 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 PACRGQ96M98 296 aaPredicted RBP13.97□□□□□ -0.17
SDC4-201ENST00000372733 PHF7Q9BWX1 381 aaPredicted RBP13.97□□□□□ -0.17
SDC4-201ENST00000372733 ZNF576Q9H609 170 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 SDF2L1Q9HCN8 221 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 OR14J1Q9UGF5 321 aa13.97□□□□□ -0.17
SDC4-201ENST00000372733 TRAPPC2LH3BP13 241 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 CCL4P13236 92 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 COLCA1Q6ZS62 124 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 MYPOPQ86VE0 399 aaPredicted RBP13.96□□□□□ -0.17
SDC4-201ENST00000372733 ZNF525Q8N782 197 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 KCNE4Q8WWG9 221 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 RAB40CQ96S21 281 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 HIST1H2BLQ99880 126 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 CABLES2Q9BTV7 478 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 MRPS17Q9Y2R5 130 aaKnown RBP13.96□□□□□ -0.17
SDC4-201ENST00000372733 FRYLO94915 3013 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 LRRC3CA6NJW4 275 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 HS3ST1O14792 307 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 IGKV1-39P01597 117 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 IGKV1D-39P04432 117 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 P04436 131 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 CD55P08174 381 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 ELLP55199 621 aaPredicted RBP13.96□□□□□ -0.17
SDC4-201ENST00000372733 ZNF324BQ6AW86 544 aaPredicted RBP13.96□□□□□ -0.17
SDC4-201ENST00000372733 MRPL21Q7Z2W9 205 aaKnown RBP13.96□□□□□ -0.17
SDC4-201ENST00000372733 OR1K1Q8NGR3 316 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 MEGF10Q96KG7 1140 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 REPIN1Q9BWE0 567 aaKnown RBP13.96□□□□□ -0.17
SDC4-201ENST00000372733 ZNF552Q9H707 407 aaPredicted RBP13.96□□□□□ -0.17
SDC4-201ENST00000372733 OR1A1Q9P1Q5 309 aa13.96□□□□□ -0.17
SDC4-201ENST00000372733 ERRFI1Q9UJM3 462 aaPredicted RBP13.96□□□□□ -0.17
SDC4-201ENST00000372733 PI4KAP42356 2102 aa13.96□□□□□ -0.18
SDC4-201ENST00000372733 C5orf49A4QMS7 147 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 C9J4A7 227 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 CTXN2P0C2S0 81 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 CHD3Q12873 2000 aaKnown RBP13.95□□□□□ -0.18
SDC4-201ENST00000372733 IL1F10Q8WWZ1 152 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 POM121Q96HA1 1249 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 PLK3Q9H4B4 646 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 OR2W1Q9Y3N9 320 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 TRAV39A0A0B4J263 110 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 A0A1B0GV90 55 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 ARF1P84077 181 aaKnown RBP13.95□□□□□ -0.18
SDC4-201ENST00000372733 HNF4GQ14541 408 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 BEND4Q6ZU67 534 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 SAP25Q8TEE9 199 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 CLDN23Q96B33 292 aa13.95□□□□□ -0.18
SDC4-201ENST00000372733 SYNGR2O43760 224 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 MDH2P40926 338 aaKnown RBP13.94□□□□□ -0.18
SDC4-201ENST00000372733 CEACAM21Q3KPI0 293 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 WDR25Q64LD2 544 aaPredicted RBP13.94□□□□□ -0.18
SDC4-201ENST00000372733 MKXQ8IYA7 352 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 SAXO1Q8IYX7 474 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 SPEM1Q8N4L4 309 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 OR10J5Q8NHC4 309 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 MBD3L1Q8WWY6 194 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 RBKSQ9H477 322 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 PRDM6Q9NQX0 595 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 TMEM242Q9NWH2 141 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 PSENENQ9NZ42 101 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 TRBV24-1A0A075B6N3 115 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 MAP1LC3B2A6NCE7 125 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 ZNF503-AS2A6NEH8 195 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms