RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CHAC2Q8WUX2 184 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 TRAV39A0A0B4J263 110 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 IGHV5-10-1A0A0J9YXX1 117 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 CXCL2P19875 107 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 B2MP61769 119 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 TRIP6Q15654 476 aaKnown RBP9.97□□□□□ -0.81
PTPRF-203ENST00000372407 DCAF12L2Q5VW00 463 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 LYPD8Q6UX82 237 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 SFTPA2Q8IWL1 248 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 MRPL30Q8TCC3 161 aaKnown RBP9.97□□□□□ -0.81
PTPRF-203ENST00000372407 NRIP2Q9BQI9 281 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 SMOC1Q9H4F8 434 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 PRNDQ9UKY0 176 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 M0R143 59 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 DLL1O00548 723 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 GOSR1O95249 250 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 TCL1AP56279 114 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 PLPPR5Q32ZL2 321 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 LRP11Q86VZ4 500 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 ZNF596Q8TC21 504 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 PACRGQ96M98 296 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-203ENST00000372407 HDHD3Q9BSH5 251 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-203ENST00000372407 TMEM191AQ9H0A3 160 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 LPAR5Q9H1C0 372 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 RNF122Q9H9V4 155 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 A0A0J9YW62 118 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 NPY1RP25929 384 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 LTBRP36941 435 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 TMEM50BP56557 158 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 LYZP61626 148 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 SERF2P84101 59 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 FUT5Q11128 374 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 TNXAQ16473 311 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 Q1RN00 199 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 FBXW9Q5XUX1 488 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 RFLNBQ8N5W9 214 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 MIOXQ9UGB7 285 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 PILRAQ9UKJ1 303 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 IGHV4-34P06331 123 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 FAM157CP0CG43 387 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 HLA-DRB5Q30154 266 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 INO80CQ6PI98 192 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-203ENST00000372407 ANGPTL4Q9BY76 406 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 PITPNC1Q9UKF7 332 aa9.97□□□□□ -0.81
PTPRF-203ENST00000372407 SDK2Q58EX2 2172 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 PDE6DO43924 150 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 OR4A8P0C604 315 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 RBM11P57052 281 aaKnown RBP9.96□□□□□ -0.81
PTPRF-203ENST00000372407 C3AR1Q16581 482 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 LINC00596Q86U02 117 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 GRAMD2BQ96HH9 432 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 FCGR3AP08637 254 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 IFI6P09912 130 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 ELOBQ15370 118 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 C1orf100Q5SVJ3 147 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 TGIF2LYQ8IUE0 185 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 H1FOOQ8IZA3 346 aaPredicted RBP9.96□□□□□ -0.81
PTPRF-203ENST00000372407 STXBP6Q8NFX7 210 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 SLC25A40Q8TBP6 338 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 ABHD14AQ9BUJ0 271 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 RNF7Q9UBF6 113 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 GPR132Q9UNW8 380 aa9.96□□□□□ -0.81
PTPRF-203ENST00000372407 TDRD15B5MCY1 1934 aaKnown RBP9.96□□□□□ -0.82
PTPRF-203ENST00000372407 ZNF98A6NK75 572 aa9.96□□□□□ -0.82
PTPRF-203ENST00000372407 K7ESF4 209 aa9.96□□□□□ -0.82
PTPRF-203ENST00000372407 SULT1A2P50226 295 aa9.96□□□□□ -0.82
PTPRF-203ENST00000372407 STARD6P59095 220 aa9.96□□□□□ -0.82
PTPRF-203ENST00000372407 MOGAT3Q86VF5 341 aa9.96□□□□□ -0.82
PTPRF-203ENST00000372407 TMEM252Q8N6L7 170 aa9.96□□□□□ -0.82
PTPRF-203ENST00000372407 ZNF501Q96CX3 271 aaPredicted RBP9.96□□□□□ -0.82
PTPRF-203ENST00000372407 NPAS1Q99742 590 aa9.96□□□□□ -0.82
PTPRF-203ENST00000372407 DUSP15Q9H1R2 295 aaPredicted RBP9.96□□□□□ -0.82
PTPRF-203ENST00000372407 GSX1Q9H4S2 264 aaPredicted RBP9.96□□□□□ -0.82
PTPRF-203ENST00000372407 FSCN3Q9NQT6 498 aa9.96□□□□□ -0.82
PTPRF-203ENST00000372407 ADAMTS17Q8TE56 1095 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 CA5BP1Q8WTZ4 195 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 SLC25A38Q96DW6 304 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 FUT9Q9Y231 359 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 HELTA6NFD8 242 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 FAM157AC9JC47 383 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 TSPAN2O60636 221 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 UPK3AO75631 287 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 PTBP3O95758 552 aaKnown RBP9.95□□□□□ -0.82
PTPRF-203ENST00000372407 CD3EP07766 207 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 SCGB1C2P0DMR2 95 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 PSG2P11465 335 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 COL8A1P27658 744 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 ZNF660Q6AZW8 331 aaPredicted RBP9.95□□□□□ -0.82
PTPRF-203ENST00000372407 SLC23A3Q6PIS1 610 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 BHLHA15Q7RTS1 189 aaPredicted RBP9.95□□□□□ -0.82
PTPRF-203ENST00000372407 OR1B1Q8NGR6 318 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 DYRK2Q92630 601 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 AMELYQ99218 206 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 WFDC6Q9BQY6 131 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 SF3B6Q9Y3B4 125 aaKnown RBP9.95□□□□□ -0.82
PTPRF-203ENST00000372407 A0A1W2PP11 408 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 OR2T8A6NH00 312 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 CSN3P07498 182 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 CSRP3P50461 194 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 UBE2V2Q15819 145 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms