RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 PRSS54Q6PEW0 395 aa10.02□□□□□ -0.8
SYNE1-204ENST00000367248 DUSP18Q8NEJ0 188 aa10.02□□□□□ -0.8
SYNE1-204ENST00000367248 RNF122Q9H9V4 155 aa10.02□□□□□ -0.8
SYNE1-204ENST00000367248 LPAR3Q9UBY5 353 aa10.02□□□□□ -0.8
SYNE1-204ENST00000367248 TCF20Q9UGU0 1960 aaKnown RBP10.02□□□□□ -0.8
SYNE1-204ENST00000367248 ZNF705GA8MUZ8 300 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-204ENST00000367248 MPC2O95563 127 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 TBC1D26Q86UD7 250 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 OR4A4PQ8NGN8 299 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 MS4A10Q96PG2 267 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 SMIM7Q9BQ49 75 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 DOPEY2Q9Y3R5 2298 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 UMODP07911 640 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 TNFSF10P50591 281 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 LIAT1Q6ZQX7 453 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 OR5C1Q8NGR4 320 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 LOC285556D6RIA3 1793 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 LOC102723996A0A087X1L8 192 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 A0A0G2JMM0 328 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 A0A1W2PPB8 328 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 A0A1W2PRS3 328 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 KIR3DP1A8MWS1 328 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 CFHR1Q03591 330 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 ZBTB34Q8NCN2 500 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 FLVCR1-AS1Q8TAF5 88 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 DBX1A6NMT0 343 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 SYNGR2O43760 224 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 HOGA1Q86XE5 327 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 OR10A7Q8NGE5 316 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 MITD1Q8WV92 249 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 MARS2Q96GW9 593 aaKnown RBP10.02□□□□□ -0.81
SYNE1-204ENST00000367248 FOCADQ5VW36 1801 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 CACNA1HO95180 2353 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 CDK2AP1O14519 115 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 PPP1CCP36873 323 aaKnown RBP10.02□□□□□ -0.81
SYNE1-204ENST00000367248 LINC01590Q5TEZ4 76 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 NFAM1Q8NET5 270 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-204ENST00000367248 FLYWCH2Q96CP2 140 aaKnown RBP10.02□□□□□ -0.81
SYNE1-204ENST00000367248 COL25A1Q9BXS0 654 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-204ENST00000367248 PRR13Q9NZ81 148 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 ATPIF1Q9UII2 106 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 GAB2Q9UQC2 676 aa10.02□□□□□ -0.81
SYNE1-204ENST00000367248 MYO16Q9Y6X6 1858 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 SRSF6Q13247 344 aaKnown RBP10.01□□□□□ -0.81
SYNE1-204ENST00000367248 PHYHD1Q5SRE7 291 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 OR8G5Q8NG78 346 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 SLC2A9Q9NRM0 540 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 ZNF714Q96N38 554 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 SPTAN1Q13813 2472 aaKnown RBP10.01□□□□□ -0.81
SYNE1-204ENST00000367248 NTN3O00634 580 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-204ENST00000367248 BAGE3Q86Y29 109 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 BAGE2Q86Y30 109 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 WNT5BQ9H1J7 359 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 TMEM231Q9H6L2 316 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 KCNAB3O43448 404 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 CNN1P51911 297 aaKnown RBP10.01□□□□□ -0.81
SYNE1-204ENST00000367248 ERVFRD-1P60508 538 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 PRB3Q04118 309 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-204ENST00000367248 DOLPP1Q86YN1 238 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 J3QW42 95 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 B3GALNT1O75752 331 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 ENDOGQ14249 297 aaKnown RBP10.01□□□□□ -0.81
SYNE1-204ENST00000367248 TXN2Q99757 166 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 SDK2Q58EX2 2172 aa10.01□□□□□ -0.81
SYNE1-204ENST00000367248 POLR2GP62487 172 aaKnown RBP eCLIP10□□□□□ -0.81
SYNE1-204ENST00000367248 HOXA4Q00056 320 aaPredicted RBP10□□□□□ -0.81
SYNE1-204ENST00000367248 Q6ZT83 130 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 LEAP2Q969E1 77 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 TMEM45BQ96B21 275 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 MED19A0JLT2 244 aaPredicted RBP10□□□□□ -0.81
SYNE1-204ENST00000367248 C1orf100Q5SVJ3 147 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 PIPOXQ9P0Z9 390 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 RAMP1O60894 148 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 FGF12P61328 243 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 C11orf44Q8N8P7 122 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 Q9N2K0 584 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 IGHV1-69-2A0A0G2JMI3 117 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 SLC35B1P78383 322 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 ZNF90Q03938 601 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 SHISA5Q8N114 240 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 FAM168AQ92567 244 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 LINC00470Q9BZP3 86 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 LPAR5Q9H1C0 372 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 FOXD3Q9UJU5 478 aaPredicted RBP10□□□□□ -0.81
SYNE1-204ENST00000367248 A0A1W2PP11 408 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 SLC25A5P05141 298 aaKnown RBP10□□□□□ -0.81
SYNE1-204ENST00000367248 NQO2P16083 231 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 ZNF708P17019 499 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 CCDC144NLQ6NUI1 221 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 DTD1Q8TEA8 209 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 PKIBQ9C010 78 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 CLCF1Q9UBD9 225 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 LOC105371242A0A075B767 164 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 PPIAL4CA0A0B4J2A2 164 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 METTL15P1P0C7V9 234 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 PPIAL4GP0DN37 164 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 RBPMS2Q6ZRY4 209 aaKnown RBP10□□□□□ -0.81
SYNE1-204ENST00000367248 ZNRF4Q8WWF5 429 aa10□□□□□ -0.81
SYNE1-204ENST00000367248 HDHD3Q9BSH5 251 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-204ENST00000367248 ASCL3Q9NQ33 180 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms