RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 IGLV2-14P01704 120 aa17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 OMGP23515 440 aa17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 MPV17P39210 176 aa17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 VAMP2P63027 116 aa17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 OR51H1Q8NH63 302 aa17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 KLF14Q8TD94 323 aaPredicted RBP17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 SCRT1Q9BWW7 348 aa17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 C19orf12Q9NSK7 152 aa17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 TAAR3PQ9P1P4 343 aa17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 TRAPPC2LQ9UL33 140 aa17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 STRAPQ9Y3F4 350 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-203ENST00000359902 A0A0G2JRQ6 117 aa17.62■□□□□ 0.41
CCDC88B-203ENST00000359902 PITX3O75364 302 aa17.62■□□□□ 0.41
CCDC88B-203ENST00000359902 CNOT4O95628 575 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-203ENST00000359902 GRPP07492 148 aa17.62■□□□□ 0.41
CCDC88B-203ENST00000359902 CBR1P16152 277 aa17.62■□□□□ 0.41
CCDC88B-203ENST00000359902 OR8G1Q15617 311 aa17.62■□□□□ 0.41
CCDC88B-203ENST00000359902 COMMD1Q8N668 190 aa17.62■□□□□ 0.41
CCDC88B-203ENST00000359902 C9orf106Q8NAJ2 232 aa17.62■□□□□ 0.41
CCDC88B-203ENST00000359902 TMEM171Q8WVE6 324 aa17.62■□□□□ 0.41
CCDC88B-203ENST00000359902 SH2D1BO14796 132 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 CHST1O43916 411 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 AGFG2O95081 481 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 PRH1P02810 166 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 WNT2P09544 360 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 PSG2P11465 335 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 HOXB1P14653 301 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 MMP9P14780 707 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 SELEP16581 610 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 LMO1P25800 156 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 VWA1Q6PCB0 445 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 PRR18Q8N4B5 295 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 WDR31Q8NA23 367 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 RNF115Q9Y4L5 304 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 PRRC2CQ9Y520 2896 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 TRAV17A0A0B4J275 112 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 NXPH3O95157 252 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 ZNF266Q14584 549 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 GPR146Q96CH1 333 aa17.61■□□□□ 0.41
CCDC88B-203ENST00000359902 IGKV3-15P01624 115 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 SERPINE2P07093 398 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 COX5AP20674 150 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 LINC00518Q8N0U6 118 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 MBNL3Q9NUK0 354 aaKnown RBP17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 TINAGQ9UJW2 476 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 WIPI2Q9Y4P8 454 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 RFNGQ9Y644 331 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 TMEM210A6NLX4 147 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 NFYBP25208 207 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 PAX9P55771 341 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 TMEM182Q6ZP80 229 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 OR5C1Q8NGR4 320 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 UBALD1Q8TB05 177 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 AKR1E2Q96JD6 320 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 OTOGLQ3ZCN5 2332 aa17.6■□□□□ 0.41
CCDC88B-203ENST00000359902 PCP4L1A6NKN8 68 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 CST7O76096 145 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 ACAA1P09110 424 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 GUK1Q16774 197 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 OBP2BQ9NPH6 170 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 NDRG3Q9UGV2 375 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 TTC28Q96AY4 2481 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 A0A1B0GU03 582 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 K7N7A8 449 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 MLNRO43193 412 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 HEXAP06865 529 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 SLC25A6P12236 298 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 ATP6V0CP27449 155 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 DYNLT3P51808 116 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 FOXF2Q12947 444 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 HFEQ30201 348 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 HES4Q9HCC6 221 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 PPP1R3CQ9UQK1 317 aa17.59■□□□□ 0.41
CCDC88B-203ENST00000359902 MED19A0JLT2 244 aaPredicted RBP17.58■□□□□ 0.41
CCDC88B-203ENST00000359902 HSPA12AO43301 675 aa17.58■□□□□ 0.41
CCDC88B-203ENST00000359902 IGKV1-39P01597 117 aa17.58■□□□□ 0.41
CCDC88B-203ENST00000359902 IGKV1D-39P04432 117 aa17.58■□□□□ 0.41
CCDC88B-203ENST00000359902 EPHA1P21709 976 aa17.58■□□□□ 0.41
CCDC88B-203ENST00000359902 HMGN3Q15651 99 aa17.58■□□□□ 0.41
CCDC88B-203ENST00000359902 C11orf53Q8IXP5 236 aa17.58■□□□□ 0.41
CCDC88B-203ENST00000359902 OR8G5Q8NG78 346 aa17.58■□□□□ 0.41
CCDC88B-203ENST00000359902 SARAFQ96BY9 339 aa17.58■□□□□ 0.41
CCDC88B-203ENST00000359902 PIGBOS1A0A0B4J2F0 54 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 KIAA1324LA8MWY0 1029 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 PRR33A8MZF0 331 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 WRBO00258 174 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 HAND1O96004 215 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 HOXC12P31275 282 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 CEBPDP49716 269 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 PPT1P50897 306 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 BAXQ07812 192 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 PEA15Q15121 130 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 Q6ZRM9 215 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 C1orf162Q8NEQ5 155 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 OR2G3Q8NGZ4 309 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 FAM213BQ8TBF2 198 aa17.58■□□□□ 0.4
CCDC88B-203ENST00000359902 CEACAM6P40199 344 aa17.57■□□□□ 0.4
CCDC88B-203ENST00000359902 IZUMO4Q1ZYL8 232 aa17.57■□□□□ 0.4
CCDC88B-203ENST00000359902 TMEM217Q8N7C4 229 aa17.57■□□□□ 0.4
CCDC88B-203ENST00000359902 OR14J1Q9UGF5 321 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms