RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 GPR61Q9BZJ8 451 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 TRBV6-7A0A0A0MS04 114 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 M0R1X1 148 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 TBX6O95947 436 aaPredicted RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 UNC119Q13432 240 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 TMEM97Q5BJF2 176 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 PLAC9Q5JTB6 97 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 ZNF343Q6P1L6 599 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 BTNL3Q6UXE8 466 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 ETV3LQ6ZN32 361 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 GABRG3Q99928 467 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 TM2D1Q9BX74 207 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 C12orf49Q9H741 205 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 UQCR10Q9UDW1 63 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 TEX50A0A1B0GTY4 177 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 DIRC3C9JPN6 131 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 COX7A2P2O60397 106 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 ID4P47928 161 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 IL11RAQ14626 422 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HLA-BQ31612 363 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 OR5A2Q8NGI9 324 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HDHD3Q9BSH5 251 aaPredicted RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 PPP1CCP36873 323 aaKnown RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 FGF12P61328 243 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 SRSF4Q08170 494 aaKnown RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 TMEM187Q14656 261 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 RHBDD2Q6NTF9 364 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 ARL6IP6Q8N6S5 226 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 ABHD5Q8WTS1 349 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 RTBDNQ9BSG5 229 aaPredicted RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 FOXQ1Q9C009 403 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 SCN5AQ14524 2016 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 BCL3P20749 454 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 SRSF3P84103 164 aaKnown RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 PLPPR5Q32ZL2 321 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 BIVMQ86UB2 503 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 OR11L1Q8NGX0 322 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 Q8WTZ3 238 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 PCED1AQ9H1Q7 454 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 CCL28Q9NRJ3 127 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HSPB8Q9UJY1 196 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 TIMM9Q9Y5J7 89 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HELTA6NFD8 242 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 ISLRO14498 428 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 KLK2P20151 261 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 LEMD1Q68G75 181 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 CADM4Q8NFZ8 388 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 MRGPRFQ96AM1 343 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 FAM122AQ96E09 287 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H2BKO60814 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H2BJP06899 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 BMP5P22003 454 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H2BOP23527 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H2BBP33778 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 CSN1S1P47710 185 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 MLF1P58340 268 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H2BDP58876 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H2BCP62807 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST2H2BEQ16778 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H2BHQ93079 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 SCARF2Q96GP6 870 aaPredicted RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H2BNQ99877 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H2BMQ99879 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 PARLQ9H300 379 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 ZNF665Q9H7R5 613 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 RALGAPA1Q6GYQ0 2036 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 G3V3Y1 287 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 CXCL13O43927 109 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 ZNF708P17019 499 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 CTAG1AP78358 180 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 C1orf53Q5VUE5 145 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 C1QL3Q5VWW1 255 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 CCDC74BQ96LY2 380 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 TMEM56Q96MV1 263 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 SAP30LQ9HAJ7 183 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 A0A096LPE4 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 A0A1W2PPZ6 126 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 CD82P27701 267 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 FAM27BQ5VT28 67 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 FAM117AQ9C073 453 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 PPP1R14DQ9NXH3 145 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 MS4A18H0YCH9 400 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 LAMTOR5O43504 91 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 RUNX1Q01196 453 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 MGAT2Q10469 447 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 MS4A18Q3C1V0 323 aa4.17□□□□□ -1.74
CSMD3-203ENST00000343508 SELENOHQ8IZQ5 122 aaKnown RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 TAF15Q92804 592 aaKnown RBP eCLIP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 THOC3Q96J01 351 aaKnown RBP4.17□□□□□ -1.74
CSMD3-203ENST00000343508 SHISA8B8ZZ34 492 aa4.16□□□□□ -1.74
CSMD3-203ENST00000343508 FOXS1O43638 330 aa4.16□□□□□ -1.74
CSMD3-203ENST00000343508 SRSF10O75494 262 aaKnown RBP4.16□□□□□ -1.74
CSMD3-203ENST00000343508 HIST1H1EP10412 219 aaKnown RBP4.16□□□□□ -1.74
CSMD3-203ENST00000343508 SRD5A2P31213 254 aa4.16□□□□□ -1.74
CSMD3-203ENST00000343508 WDR74Q6RFH5 385 aaPredicted RBP4.16□□□□□ -1.74
CSMD3-203ENST00000343508 TGIF2LYQ8IUE0 185 aa4.16□□□□□ -1.74
CSMD3-203ENST00000343508 OR2D3Q8NGH3 330 aa4.16□□□□□ -1.74
CSMD3-203ENST00000343508 OR10D3Q8NH80 312 aa4.16□□□□□ -1.74
CSMD3-203ENST00000343508 SFRP2Q96HF1 295 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms