RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CASTOR1Q8WTX7 329 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 ZNF486Q96H40 463 aaPredicted RBP12.92□□□□□ -0.34
LIMS1-202ENST00000338045 RANBP3Q9H6Z4 567 aaPredicted RBP12.92□□□□□ -0.34
LIMS1-202ENST00000338045 ARFGEF3Q5TH69 2177 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 FAM172BPA6NC97 362 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 OOEPA6NGQ2 149 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 MGST3O14880 152 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 GLIPR1P48060 266 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 PIGPP57054 158 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 SSTP61278 116 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 DCAF12L2Q5VW00 463 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 OR5M8Q8NGP6 311 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 HYLS1Q96M11 299 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 BBC3Q96PG8 261 aaPredicted RBP12.91□□□□□ -0.34
LIMS1-202ENST00000338045 SLC2A9Q9NRM0 540 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 OPN4Q9UHM6 478 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 C12orf77C9JDV5 145 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 TMEM178BH3BS89 294 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 NDUFA2O43678 99 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 SRSF4Q08170 494 aaKnown RBP12.91□□□□□ -0.34
LIMS1-202ENST00000338045 CCDC28AQ8IWP9 274 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 C1orf87Q8N0U7 546 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 ZNRF1Q8ND25 227 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 OR2T35Q8NGX2 323 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 LURAP1Q96LR2 239 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 CHIAQ9BZP6 476 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 NCOR1P1Q9H4R4 102 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 KCNIP1Q9NZI2 227 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 OR2W1Q9Y3N9 320 aa12.91□□□□□ -0.34
LIMS1-202ENST00000338045 DSCAMO60469 2012 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 IGKV1D-13A0A0B4J2D9 117 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 SIX6O95475 246 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 HEXAP06865 529 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 IGKV1-13P0DP09 117 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 IGFBP2P18065 325 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 GNRHRP30968 328 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 SNRPD2P62316 118 aaKnown RBP12.9□□□□□ -0.34
LIMS1-202ENST00000338045 SLC9A3R2Q15599 337 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 CR1LQ2VPA4 569 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 ANKRD55Q3KP44 614 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 LIN54Q6MZP7 749 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 C11orf88Q6PI97 169 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 ZNF788Q6ZQV5 615 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 SGPP2Q8IWX5 399 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 IL1F10Q8WWZ1 152 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 WDR89Q96FK6 387 aaPredicted RBP12.9□□□□□ -0.34
LIMS1-202ENST00000338045 GALNT14Q96FL9 552 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 OR1A1Q9P1Q5 309 aa12.9□□□□□ -0.34
LIMS1-202ENST00000338045 SPTBN1Q01082 2364 aaKnown RBP12.9□□□□□ -0.34
LIMS1-202ENST00000338045 LGALS8O00214 317 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 RND3P61587 244 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 ABCA11PQ4W5N1 156 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 TRAT1Q6PIZ9 186 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 OR11H4Q8NGC9 324 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 OR5D13Q8NGL4 314 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 COQ8AQ8NI60 647 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 RTN4IP1Q8WWV3 396 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-202ENST00000338045 GAFA1Q96PS6 74 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 TOLLIPQ9H0E2 274 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 FAM234AQ9H0X4 552 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 NAA60Q9H7X0 242 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 TMEM106BQ9NUM4 274 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 TRAV38-1A0A0B4J264 116 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 ODAMA1E959 279 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 IFNA2P01563 188 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 DNASE1P24855 282 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 PPOXP50336 477 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 Q5BKY6 102 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 LDLRAD3Q86YD5 345 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 FAM185AQ8N0U4 392 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 PRR18Q8N4B5 295 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 TPRX1Q8N7U7 411 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 OR13A1Q8NGR1 328 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 MRGPRDQ8TDS7 321 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 ZNF665Q9H7R5 613 aa12.89□□□□□ -0.35
LIMS1-202ENST00000338045 ABCA4P78363 2273 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 TANC2Q9HCD6 1990 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 TEX13DA0A0J9YY54 714 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-202ENST00000338045 SIGLEC5O15389 551 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 RGS11O94810 467 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 GYPAP02724 150 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 EDDM3AQ14507 147 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 Q3ZCU0 254 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 PHLDA2Q53GA4 152 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 KCTD9Q7L273 389 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 CCDC71LQ8N9Z2 235 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 DEFB108BQ8NET1 73 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 OR1L1Q8NH94 360 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 SECTM1Q8WVN6 248 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 CCL17Q92583 94 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 GALMQ96C23 342 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 SLC5A7Q9GZV3 580 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 DNTTIP1Q9H147 329 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 RAB18Q9NP72 206 aa12.88□□□□□ -0.35
LIMS1-202ENST00000338045 PPIAL4EA0A075B759 164 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 PPIAL4DF5H284 164 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 C15orf65H3BRN8 121 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 C19orf84I3L1E1 186 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 GPR31O00270 319 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 HBZP02008 142 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms