RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 Q6ZSV7 163 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 MRGPRDQ8TDS7 321 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 CHAC2Q8WUX2 184 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 FAM46BQ96A09 425 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 KIRREL1Q96J84 757 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 CALYQ9NYX4 217 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 GHRLQ9UBU3 117 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 NPIPB11E5RHQ5 1161 aa12.77□□□□□ -0.36
CLN3-201ENST00000333496 MINOS1Q5TGZ0 78 aa12.77□□□□□ -0.36
CLN3-201ENST00000333496 OR10K2Q6IF99 312 aa12.77□□□□□ -0.36
CLN3-201ENST00000333496 RTN4RL2Q86UN3 420 aa12.77□□□□□ -0.36
CLN3-201ENST00000333496 OR4F5Q8NH21 305 aa12.77□□□□□ -0.36
CLN3-201ENST00000333496 KCNK15Q9H427 330 aa12.77□□□□□ -0.36
CLN3-201ENST00000333496 HILPDAQ9Y5L2 63 aa12.77□□□□□ -0.36
CLN3-201ENST00000333496 MINOS1-NBL1R4GNA1 71 aa12.77□□□□□ -0.36
CLN3-201ENST00000333496 FAM90A10PA6NDY2 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A18PA6NE21 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A16PA6NEW6 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A20PA6NIJ5 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A7PA6NKC0 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 POM121CA8CG34 1229 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A22PA8MWA6 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A12PA8MX19 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A5PA8MXJ8 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A23PA8MXZ1 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A15PP0C7V4 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A13PP0C7W8 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A14PP0C7W9 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM90A24PP0C7X0 464 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 VSIG8P0DPA2 414 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 SSTR5P35346 364 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 RPS19P39019 145 aaKnown RBP12.77□□□□□ -0.37
CLN3-201ENST00000333496 FAM189A2Q15884 450 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 RAB12Q6IQ22 244 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 ZNF497Q6ZNH5 498 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 LINC01006Q8NI28 216 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 RFESDQ8TAC1 157 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 AP3S1Q92572 193 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 SLC25A46Q96AG3 418 aa12.77□□□□□ -0.37
CLN3-201ENST00000333496 AK6Q9Y3D8 172 aaKnown RBP12.77□□□□□ -0.37
CLN3-201ENST00000333496 TMEM30CPA0ZSE6 113 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 MPIG6BO95866 241 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 MT-ND4P03905 459 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 NFYBP25208 207 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 HTR1DP28221 377 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 HTR2CP28335 458 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 SDC2P34741 201 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 QRFPP83859 136 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 UNC119Q13432 240 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 DHRS7BQ6IAN0 325 aaPredicted RBP12.76□□□□□ -0.37
CLN3-201ENST00000333496 CCBE1Q6UXH8 406 aaPredicted RBP12.76□□□□□ -0.37
CLN3-201ENST00000333496 AKAP14Q86UN6 197 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 NEK7Q8TDX7 302 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 CST11Q9H112 138 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 SLITRK2Q9H156 845 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 BEX1Q9HBH7 125 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 SPACA1Q9HBV2 294 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 IDI2-AS1Q9NZ38 188 aa12.76□□□□□ -0.37
CLN3-201ENST00000333496 A0A1B0GUS0 222 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 CLPSL1A2RUU4 121 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 MCRIP1C9JLW8 97 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 CHST1O43916 411 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 ARL6IP5O75915 188 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 TSPAN9O75954 239 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 UBBP0CG47 229 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 TNFSF8P32971 234 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 HLA-DRB5Q30154 266 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 OLFML2AQ68BL7 652 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 GAPTQ8N292 157 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 ZNF596Q8TC21 504 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 CCDC107Q8WV48 283 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 DPM3Q9P2X0 92 aa12.75□□□□□ -0.37
CLN3-201ENST00000333496 SHISA3A0PJX4 238 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 TMEM14DPA8MWL7 114 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 C15orf65H3BRN8 121 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 CTDSP2O14595 271 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 RGS5O15539 181 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 ATP6V1G1O75348 118 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 IGHV3-7P01780 117 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 GZMHP20718 246 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 FUT3P21217 361 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 DYNLT3P51808 116 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 MXD1Q05195 221 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 SRSF4Q08170 494 aaKnown RBP12.74□□□□□ -0.37
CLN3-201ENST00000333496 RBM39Q14498 530 aaKnown RBP12.74□□□□□ -0.37
CLN3-201ENST00000333496 LTC4SQ16873 150 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 OR6M1Q8NGM8 313 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 WFDC12Q8WWY7 111 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 LEAP2Q969E1 77 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 C16orf95Q9H693 158 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 TCF19Q9Y242 345 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 V9GYH0 126 aa12.74□□□□□ -0.37
CLN3-201ENST00000333496 LY6LH3BQJ8 138 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 BUB1B-PAK6H3BSN5 160 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 AIPO00170 330 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 SLC17A2O00624 439 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 CLEC2LP0C7M8 214 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 RPS27AP62979 156 aaKnown RBP12.73□□□□□ -0.37
CLN3-201ENST00000333496 SHISA2Q6UWI4 295 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 OR10A7Q8NGE5 316 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms