RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 KRTAP24-1Q3LI83 254 aa12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 OLFML2AQ68BL7 652 aa12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 OR1L1Q8NH94 360 aa12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 ZNF596Q8TC21 504 aa12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 SSMEM1Q8WWF3 244 aa12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 TAF9BQ9HBM6 251 aa12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 RAB9BQ9NP90 201 aa12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 MBNL3Q9NUK0 354 aaKnown RBP12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 RHBDL2Q9NX52 303 aa12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 ETV7Q9Y603 341 aa12.9□□□□□ -0.34
CCDC28A-201ENST00000332797 IGHV3-43A0A0B4J1X8 118 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 RNF212BA8MTL3 300 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 IGHV3-43DP0DP04 118 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 GNB3P16520 340 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 RPL5P46777 297 aaKnown RBP12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 GNG10P50151 68 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 SCAND1P57086 179 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 LDLRAD2Q5SZI1 272 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 CLVS1Q8IUQ0 354 aaPredicted RBP12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 BEND2Q8NDZ0 799 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 OR4P4Q8NGL7 312 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 TMEM158Q8WZ71 300 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 SLC25A46Q96AG3 418 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 CMSS1Q9BQ75 279 aaKnown RBP12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 RIMS4Q9H426 269 aaPredicted RBP12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 ZMAT3Q9HA38 289 aaKnown RBP12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 C12orf4Q9NQ89 552 aa12.89□□□□□ -0.35
CCDC28A-201ENST00000332797 CLDN34H7C241 214 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 F2RL2O00254 374 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 TMEM127O75204 238 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 IGLV1-47P01700 117 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 HIST1H1DP16402 221 aaKnown RBP12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 HTR1DP28221 377 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 IER3P46695 156 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 PRRX1P54821 245 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 MRPS15P82914 257 aaKnown RBP12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 PLA1AQ53H76 456 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 MINOS1Q5TGZ0 78 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 Q6ZPA2 131 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 MOB1BQ7L9L4 216 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 C5orf24Q7Z6I8 188 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 DYNAPQ8N1N2 210 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 OR9G1Q8NH87 305 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 SLC25A38Q96DW6 304 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 GFOD1Q9NXC2 390 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 ABRACLQ9P1F3 81 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 PSG11Q9UQ72 335 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 KCNK7Q9Y2U2 307 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 MINOS1-NBL1R4GNA1 71 aa12.88□□□□□ -0.35
CCDC28A-201ENST00000332797 BTBD17A6NE02 478 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 MFNGO00587 321 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 RNASE1P07998 156 aaKnown RBP12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 CD3GP09693 182 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 LOXL3P58215 753 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 SSX2Q16385 188 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 HLA-DRB5Q30154 266 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 FAM53AQ6NSI3 398 aaPredicted RBP12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 ZNF880Q6PDB4 577 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 ZNF554Q86TJ5 538 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 TMEM86BQ8N661 226 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 OR10V1Q8NGI7 309 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 OR52M1Q8NGK5 317 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 ZFAND2BQ8WV99 257 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 MALSU1Q96EH3 234 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 MEGF9Q9H1U4 602 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 MMP28Q9H239 520 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 DPAGT1Q9H3H5 408 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 GNG12Q9UBI6 72 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 SPATA2Q9UM82 520 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 HILPDAQ9Y5L2 63 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 POMT1Q9Y6A1 747 aa12.87□□□□□ -0.35
CCDC28A-201ENST00000332797 TRBV6-6A0A0A6YYG2 114 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 A0A1W2PPE3 182 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 J3QR06 171 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 SCGNO76038 276 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 HMGN3Q15651 99 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 LRRC75BQ2VPJ9 315 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 TMEM30BQ3MIR4 351 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 CDNFQ49AH0 187 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 FAM216AQ8WUB2 273 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 PHF21AQ96BD5 680 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 MDFIQ99750 246 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 SSX3Q99909 188 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 C19orf24Q9BVV8 132 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 CHIAQ9BZP6 476 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 DCSTAMPQ9H295 470 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 DPM3Q9P2X0 92 aa12.86□□□□□ -0.35
CCDC28A-201ENST00000332797 SERPINE3A8MV23 424 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 LEUTXA8MZ59 168 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 BUB1B-PAK6H3BSN5 160 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 H3BUX3 64 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 ARFRP1Q13795 201 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 ARL6IP1Q15041 203 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 OR52L2PQ8NGH6 319 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 IL1F10Q8WWZ1 152 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 GALMQ96C23 342 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 Q9N2K0 584 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 OR2S2Q9NQN1 319 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 AMMECR1Q9Y4X0 333 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms