RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 COL10A1Q03692 680 aa8.41□□□□□ -1.06
HMGB3-201ENST00000325307 TLE4Q04727 773 aa8.41□□□□□ -1.06
HMGB3-201ENST00000325307 ATXN7L3Q14CW9 347 aaPredicted RBP8.41□□□□□ -1.06
HMGB3-201ENST00000325307 OR52W1Q6IF63 320 aa8.41□□□□□ -1.06
HMGB3-201ENST00000325307 BVESQ8NE79 360 aa8.41□□□□□ -1.06
HMGB3-201ENST00000325307 ALX4Q9H161 411 aaPredicted RBP8.41□□□□□ -1.06
HMGB3-201ENST00000325307 RCC2Q9P258 522 aaKnown RBP8.41□□□□□ -1.06
HMGB3-201ENST00000325307 UTP20O75691 2785 aaKnown RBP8.4□□□□□ -1.06
HMGB3-201ENST00000325307 OOEPA6NGQ2 149 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 ZNF729A6NN14 1252 aaPredicted RBP8.4□□□□□ -1.06
HMGB3-201ENST00000325307 ZNF736B4DX44 427 aaPredicted RBP8.4□□□□□ -1.06
HMGB3-201ENST00000325307 TMEM178BH3BS89 294 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 L7N2F9 121 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 SLC33A1O00400 549 aaPredicted RBP8.4□□□□□ -1.06
HMGB3-201ENST00000325307 CSN2P05814 226 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 NMBP08949 121 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 AMY2BP19961 511 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 AKR1D1P51857 326 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 C2orf68Q2NKX9 166 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A1Q86YD7 464 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 RDH8Q9NYR8 311 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 PIPOXQ9P0Z9 390 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 PLEKHA6Q9Y2H5 1048 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 PPIAL4EA0A075B759 164 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 PPIAL4DF5H284 164 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 SLC31A2O15432 143 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 GYPAP02724 150 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 CD74P04233 296 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 FBP1P09467 338 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 AKAIN1P0CW23 69 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 PPIAL4FP0DN26 164 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 SSBP1Q04837 148 aaKnown RBP8.4□□□□□ -1.06
HMGB3-201ENST00000325307 RBMS2Q15434 407 aaKnown RBP8.4□□□□□ -1.06
HMGB3-201ENST00000325307 STEAP1BQ6NZ63 245 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 CD177Q8N6Q3 437 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 TMPRSS13Q9BYE2 586 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 ZNF436Q9C0F3 470 aaPredicted RBP8.4□□□□□ -1.06
HMGB3-201ENST00000325307 PPIAL4AQ9Y536 164 aa8.4□□□□□ -1.06
HMGB3-201ENST00000325307 IGKV1D-17A0A075B6S4 117 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 TRAV38-1A0A0B4J264 116 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 M0QYG6 137 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 PRAF2O60831 178 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 SMIM6P0DI80 62 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 COL8A2P25067 703 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 FAUP35544 74 aaKnown RBP8.4□□□□□ -1.07
HMGB3-201ENST00000325307 GNG10P50151 68 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 TAS2R19P59542 299 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 NLRC3Q7RTR2 1065 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 DMBX1Q8NFW5 382 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 NANPQ8TBE9 248 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 NEU4Q8WWR8 484 aaPredicted RBP8.4□□□□□ -1.07
HMGB3-201ENST00000325307 GINS4Q9BRT9 223 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 METRNQ9UJH8 293 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 PCDHB10Q9UN67 800 aa8.4□□□□□ -1.07
HMGB3-201ENST00000325307 CLEC18AA5D8T8 446 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 IFNL4K9M1U5 179 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 LGALS8O00214 317 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 PSPNO60542 156 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 CA11O75493 328 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 MUC1P15941 1255 aaPredicted RBP8.39□□□□□ -1.07
HMGB3-201ENST00000325307 EDDM3AQ14507 147 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 CYB5R2Q6BCY4 276 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 CLEC18BQ6UXF7 455 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 C20orf204Q6ZNR8 217 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 PEG10Q86TG7 708 aaKnown RBP8.39□□□□□ -1.07
HMGB3-201ENST00000325307 TMEM229BQ8NBD8 167 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 CLEC18CQ8NCF0 446 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 CCL19Q99731 98 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 OCSTAMPQ9BR26 566 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 MS4A7Q9GZW8 240 aaPredicted RBP8.39□□□□□ -1.07
HMGB3-201ENST00000325307 DSCAMO60469 2012 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 SSNA1O43805 119 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 RAB3DO95716 219 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 FCGR3AP08637 254 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 DAOP14920 347 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 RAB4BP61018 213 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 UBE2MP61081 183 aaKnown RBP8.39□□□□□ -1.07
HMGB3-201ENST00000325307 CHRFAM7AQ494W8 412 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 ZNRF1Q8ND25 227 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 OR4K15Q8NH41 348 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 CCL13Q99616 98 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 PLEKHF2Q9H8W4 249 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 DCHS2Q6V1P9 2916 aa8.39□□□□□ -1.07
HMGB3-201ENST00000325307 USP9YO00507 2555 aaPredicted RBP8.39□□□□□ -1.07
HMGB3-201ENST00000325307 NKX6-3A6NJ46 265 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 CIDEAO60543 219 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 PMP2P02689 132 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 IL5P05113 134 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 S100PP25815 95 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 RNASE10Q5GAN6 216 aaKnown RBP8.38□□□□□ -1.07
HMGB3-201ENST00000325307 STPG2Q8N412 459 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 TMEM185AQ8NFB2 350 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 PPP1R35Q8TAP8 253 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 CCDC107Q8WV48 283 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 DOPEY2Q9Y3R5 2298 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 TMPRSS2O15393 492 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 IFNA6P05013 189 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 HRH1P35367 487 aa8.38□□□□□ -1.07
HMGB3-201ENST00000325307 MDH2P40926 338 aaKnown RBP8.38□□□□□ -1.07
HMGB3-201ENST00000325307 OR13C8Q8NGS7 320 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms