RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CHD5Q8TDI0 1954 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 HLA-DRB1P01911 266 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 RNASE1P07998 156 aaKnown RBP12.19□□□□□ -0.46
CSPG4-201ENST00000308508 ZNF273Q14593 569 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 OR1L8Q8NGR8 309 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 OR10D3Q8NH80 312 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 LMO7DNF2Z398 122 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 J3KRW8 73 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 DNAL4O96015 105 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 SYT8Q8NBV8 401 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 PEF1Q9UBV8 284 aaKnown RBP12.19□□□□□ -0.46
CSPG4-201ENST00000308508 MDC1Q14676 2089 aaKnown RBP12.19□□□□□ -0.46
CSPG4-201ENST00000308508 TMEM189A5PLL7 270 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 TMEM183AQ8IXX5 376 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 MRGPRX3Q96LB0 322 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 LGALS3P17931 250 aaKnown RBP12.19□□□□□ -0.46
CSPG4-201ENST00000308508 HERPUD1Q15011 391 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 MIXL1Q9H2W2 232 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 NPIPB6E9PJ23 425 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 MPDU1O75352 247 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 THSD4Q6ZMP0 1018 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 RTN4RL1Q86UN2 441 aaPredicted RBP12.19□□□□□ -0.46
CSPG4-201ENST00000308508 DOCK2Q92608 1830 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 LRRC75BQ2VPJ9 315 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 MSRB3Q8IXL7 192 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 HARBI1Q96MB7 349 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 RNF122Q9H9V4 155 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 PCOLCE2Q9UKZ9 415 aa12.19□□□□□ -0.46
CSPG4-201ENST00000308508 IGHV3-13P01766 116 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 IGHV3-7P01780 117 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 MPLP40238 635 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 WNT5AP41221 380 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 GNRHR2Q96P88 292 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 SOD3P08294 240 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 RCC1P18754 421 aaPredicted RBP12.18□□□□□ -0.46
CSPG4-201ENST00000308508 MEF2BQ02080 365 aaPredicted RBP12.18□□□□□ -0.46
CSPG4-201ENST00000308508 HYAL1Q12794 435 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 PRSS8Q16651 343 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 ARL6IP6Q8N6S5 226 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 MRPL18Q9H0U6 180 aaKnown RBP12.18□□□□□ -0.46
CSPG4-201ENST00000308508 ALX4Q9H161 411 aaPredicted RBP12.18□□□□□ -0.46
CSPG4-201ENST00000308508 MTCL1Q9Y4B5 1905 aaKnown RBP12.18□□□□□ -0.46
CSPG4-201ENST00000308508 FAM157AC9JC47 383 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 FFAR1O14842 300 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 LYPD8Q6UX82 237 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 ZNF793Q6ZN11 406 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 CCL28Q9NRJ3 127 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 TRBV9A0A0B4J1U6 114 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 SYNGR1O43759 233 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 IL11RAQ14626 422 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 ZNF318Q5VUA4 2279 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 P2RX4Q99571 388 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 MOB4Q9Y3A3 225 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 TRAV17A0A0B4J275 112 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 IL4P05112 153 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 SMIM13P0DJ93 91 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 GUCA2BQ16661 112 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 OR10AG1Q8NH19 301 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 VCX2Q9H322 139 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 MAP1LC3AQ9H492 121 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 CDC42EP2O14613 210 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 CA11O75493 328 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 OR10S1Q8NGN2 331 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 F2RL2O00254 374 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 ZNF506Q5JVG8 444 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 OR1K1Q8NGR3 316 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 UBTD1Q9HAC8 227 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 WIPI2Q9Y4P8 454 aa12.18□□□□□ -0.46
CSPG4-201ENST00000308508 TMSB15BA0A087X1C1 80 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 PLA2G10O15496 165 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 MT-CO3P00414 261 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 FAM53AQ6NSI3 398 aaPredicted RBP12.17□□□□□ -0.46
CSPG4-201ENST00000308508 LINC00518Q8N0U6 118 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 NPVFQ9HCQ7 196 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 SLC35B1P78383 322 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 NUP37Q8NFH4 326 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 RAB1CQ92928 201 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 PCGF1Q9BSM1 259 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 OR51B2Q9Y5P1 312 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 KCNE1BA0A087WTH5 132 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 EIF3IQ13347 325 aaKnown RBP12.17□□□□□ -0.46
CSPG4-201ENST00000308508 Q6ZNB5 142 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 TMUB1Q9BVT8 246 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 PSG2P11465 335 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 CDX1P47902 265 aaPredicted RBP12.17□□□□□ -0.46
CSPG4-201ENST00000308508 B4GALNT1Q00973 533 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 TOPAZ1Q8N9V7 1692 aa12.17□□□□□ -0.46
CSPG4-201ENST00000308508 A0A1W2PR80 420 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 EIF3GO75821 320 aaKnown RBP eCLIP12.16□□□□□ -0.46
CSPG4-201ENST00000308508 MPZL1O95297 269 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 GHITMQ9H3K2 345 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 INSIG2Q9Y5U4 225 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 TDRD6O60522 2096 aaKnown RBP12.16□□□□□ -0.46
CSPG4-201ENST00000308508 SCN4AP35499 1836 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 FOCADQ5VW36 1801 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 MEX3AA1L020 520 aaKnown RBP12.16□□□□□ -0.46
CSPG4-201ENST00000308508 GLULP15104 373 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 TM4SF4P48230 202 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 MRAP2Q96G30 205 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 OR8B2Q96RD0 313 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms