RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 CA6P23280 308 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 SSR4P51571 173 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 LINC00205P59089 165 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 TLE4Q04727 773 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 ENDOGQ14249 297 aaKnown RBP12.55□□□□□ -0.4
PTPN9-201ENST00000306726 ZNF574Q6ZN55 896 aaPredicted RBP12.55□□□□□ -0.4
PTPN9-201ENST00000306726 LURAP1Q96LR2 239 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 NOSIPQ9Y314 301 aaKnown RBP12.55□□□□□ -0.4
PTPN9-201ENST00000306726 CASP6P55212 293 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 SSTP61278 116 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 FAM3AP98173 230 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 PSG4Q00888 419 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 EDDM3AQ14507 147 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 HMGN3Q15651 99 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 ZNF100Q8IYN0 542 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 TUBA4BQ9H853 241 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 TIMM10BQ9Y5J6 103 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 SERPINA7P05543 415 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 HLA-GP17693 338 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 Q96M66 194 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 SPIN2AQ99865 258 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 SPIN2BQ9BPZ2 258 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 PLEKHF2Q9H8W4 249 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 MYOZ1Q9NP98 299 aaPredicted RBP12.55□□□□□ -0.4
PTPN9-201ENST00000306726 PSENENQ9NZ42 101 aa12.55□□□□□ -0.4
PTPN9-201ENST00000306726 CHD3Q12873 2000 aaKnown RBP12.54□□□□□ -0.4
PTPN9-201ENST00000306726 PDCD6O75340 191 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 ALKBH6Q3KRA9 238 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 HES3Q5TGS1 186 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 C1orf87Q8N0U7 546 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 OR10V1Q8NGI7 309 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 GATAD1Q8WUU5 269 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 DMDP11532 3685 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 NUDT19A8MXV4 375 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 PRB4P10163 310 aaPredicted RBP12.54□□□□□ -0.4
PTPN9-201ENST00000306726 FGF5P12034 268 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 NDUFB7P17568 137 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 PMS2P11Q13670 270 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 OR10J5Q8NHC4 309 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 HES7Q9BYE0 225 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 RPRMQ9NS64 109 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 FUT9Q9Y231 359 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 A0A1B0GUS0 222 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 DKK1O94907 266 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 HLA-DRB3P79483 266 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 TUBG2Q9NRH3 451 aa12.54□□□□□ -0.4
PTPN9-201ENST00000306726 PGPEP1LA6NFU8 196 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 AQP7P3A6NL99 342 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST1H2BKO60814 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST1H2BJP06899 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 SEC11BP0C7V7 166 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST1H2BOP23527 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST1H2BBP33778 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 RPL29P47914 159 aaKnown RBP12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST1H2BDP58876 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST1H2BCP62807 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 ARF1P84077 181 aaKnown RBP12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST2H2BEQ16778 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.53□□□□□ -0.4
PTPN9-201ENST00000306726 OR10D3Q8NH80 312 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST1H2BHQ93079 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 IL22RA2Q969J5 263 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST1H2BNQ99877 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 HIST1H2BMQ99879 126 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 FAM103A1Q9BTL3 118 aaKnown RBP12.53□□□□□ -0.4
PTPN9-201ENST00000306726 OR1A1Q9P1Q5 309 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 H7BYZ3 331 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 IFI6P09912 130 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 SLC35B1P78383 322 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 H3F3AP84243 136 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 LHFPL1Q86WI0 220 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 INTS1Q8N201 2190 aaKnown RBP12.53□□□□□ -0.4
PTPN9-201ENST00000306726 DDA1Q9BW61 102 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 MT-CO3P00414 261 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 OPN1MWP04001 364 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 OPN1MW2P0DN77 364 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 OPN1MW3P0DN78 364 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 RHBDD2Q6NTF9 364 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 ZNF709Q8N972 641 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 ELOVL1Q9BW60 279 aa12.53□□□□□ -0.4
PTPN9-201ENST00000306726 XKRY2A2RUG3 117 aa12.52□□□□□ -0.4
PTPN9-201ENST00000306726 APLNRP35414 380 aa12.52□□□□□ -0.4
PTPN9-201ENST00000306726 PRDX4Q13162 271 aa12.52□□□□□ -0.4
PTPN9-201ENST00000306726 TMEM164Q5U3C3 297 aa12.52□□□□□ -0.4
PTPN9-201ENST00000306726 ADGRG7Q96K78 797 aa12.52□□□□□ -0.4
PTPN9-201ENST00000306726 PISDQ9UG56 409 aa12.52□□□□□ -0.4
PTPN9-201ENST00000306726 TINAGQ9UJW2 476 aa12.52□□□□□ -0.4
PTPN9-201ENST00000306726 RTL6Q6ICC9 239 aa12.52□□□□□ -0.41
PTPN9-201ENST00000306726 GCNT2Q8N0V5 402 aa12.52□□□□□ -0.41
PTPN9-201ENST00000306726 BOD1Q96IK1 185 aa12.52□□□□□ -0.41
PTPN9-201ENST00000306726 PCGF1Q9BSM1 259 aa12.52□□□□□ -0.41
PTPN9-201ENST00000306726 ZNF107Q9UII5 783 aaPredicted RBP12.52□□□□□ -0.41
PTPN9-201ENST00000306726 TRBV6-7A0A0A0MS04 114 aa12.52□□□□□ -0.41
PTPN9-201ENST00000306726 TMEM50AO95807 157 aa12.52□□□□□ -0.41
PTPN9-201ENST00000306726 PNRC2Q9NPJ4 139 aaKnown RBP12.52□□□□□ -0.41
PTPN9-201ENST00000306726 STARD10Q9Y365 291 aa12.52□□□□□ -0.41
PTPN9-201ENST00000306726 MED13Q9UHV7 2174 aa12.52□□□□□ -0.41
PTPN9-201ENST00000306726 OR5H1A6NKK0 313 aa12.51□□□□□ -0.41
PTPN9-201ENST00000306726 PPP5D1E7EU14 171 aa12.51□□□□□ -0.41
PTPN9-201ENST00000306726 EDDM3BP56851 147 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms