RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 AQP7O14520 342 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 OR7C1O76099 320 aaPredicted RBP11.57□□□□□ -0.56
SKA3-201ENST00000298260 IL6RP08887 468 aaPredicted RBP11.57□□□□□ -0.56
SKA3-201ENST00000298260 SCTP09683 121 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 PATE4P0C8F1 98 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 HOXB2P14652 356 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 HNF1AP20823 631 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 IL3RAP26951 378 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 OR10J1P30954 320 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 ZP4Q12836 540 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 GAGE1Q13065 139 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 RAB30Q15771 203 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 ZDHHC23Q8IYP9 409 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 ZNF845Q96IR2 970 aaPredicted RBP11.57□□□□□ -0.56
SKA3-201ENST00000298260 ZDBF2Q9HCK1 2354 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 IGHV3-15A0A0B4J1V0 119 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 TRAF3IP2O43734 574 aaPredicted RBP11.56□□□□□ -0.56
SKA3-201ENST00000298260 LINC00614P0C842 121 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 MDH2P40926 338 aaKnown RBP11.56□□□□□ -0.56
SKA3-201ENST00000298260 HAPLN4Q86UW8 402 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 YAF2Q8IY57 180 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 CCDC71LQ8N9Z2 235 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 SCGB1C1Q8TD33 95 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 MANBALQ9NQG1 85 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 TRAPPC1Q9Y5R8 145 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 TTC28Q96AY4 2481 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 TRAV34A0A0B4J273 112 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 A0A1W2PQD3 144 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 MSX1P28360 303 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 CCKARP32238 428 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 RAB7AP51149 207 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 MEF2BQ02080 365 aaPredicted RBP11.56□□□□□ -0.56
SKA3-201ENST00000298260 NMSQ5H8A3 153 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 CYP2G1PQ6ZSU1 146 aa11.56□□□□□ -0.56
SKA3-201ENST00000298260 RPP25LQ8N5L8 163 aaKnown RBP11.56□□□□□ -0.56
SKA3-201ENST00000298260 MRPL30Q8TCC3 161 aaKnown RBP11.56□□□□□ -0.56
SKA3-201ENST00000298260 ZCCHC14Q8WYQ9 949 aaKnown RBP11.56□□□□□ -0.56
SKA3-201ENST00000298260 PATZ1Q9HBE1 687 aaKnown RBP11.56□□□□□ -0.56
SKA3-201ENST00000298260 TRAV1-1A0A0B4J248 108 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 CRYAAP02489 173 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 CEACAM8P31997 349 aaPredicted RBP11.55□□□□□ -0.56
SKA3-201ENST00000298260 NPBWR2P48146 333 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 PMP22Q01453 160 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 TMEM234Q8WY98 164 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 HS3ST6Q96QI5 342 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 FER1L5A0AVI2 2057 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 VSTM2BA6NLU5 285 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 KBTBD11O94819 623 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 GYPAP02724 150 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 COL8A2P25067 703 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 CHRNB4P30926 498 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 S100A7P31151 101 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 RBX1P62877 108 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 SLC25A47Q6Q0C1 308 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 ERASQ7Z444 233 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 CPEB3Q8NE35 698 aaKnown RBP11.55□□□□□ -0.56
SKA3-201ENST00000298260 MIEN1Q9BRT3 115 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 DERL1Q9BUN8 251 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 WNT5BQ9H1J7 359 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 GTF3C1Q12789 2109 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 UBE2L5PA0A1B0GUS4 154 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 CCL25O15444 150 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 FRMD6-AS1P0C7T7 363 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 IL24Q13007 206 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 RNF151Q2KHN1 245 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 MRGPRGQ86SM5 289 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 STPG4Q8N801 248 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 OR10V1Q8NGI7 309 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 DDIT4LQ96D03 193 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 FAM103A1Q9BTL3 118 aaKnown RBP11.55□□□□□ -0.56
SKA3-201ENST00000298260 ZNF703Q9H7S9 590 aaPredicted RBP11.55□□□□□ -0.56
SKA3-201ENST00000298260 GPR35Q9HC97 309 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 PLEK2Q9NYT0 353 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 COPS7AQ9UBW8 275 aa11.55□□□□□ -0.56
SKA3-201ENST00000298260 ABCA7Q8IZY2 2146 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 ZNF816-ZNF321PA0A0X1KG74 233 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 TNFRSF10CO14798 259 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 PDGFBP01127 241 aaPredicted RBP11.54□□□□□ -0.56
SKA3-201ENST00000298260 TNFP01375 233 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 TMEM41BQ5BJD5 291 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 OR8G2PQ6IF36 304 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 TGIF2LYQ8IUE0 185 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 TMEM56Q96MV1 263 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 HSPB9Q9BQS6 159 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 SLC39A9Q9NUM3 307 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 IL36RNQ9UBH0 155 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 RNF150Q9ULK6 438 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 TMEM56-RWDD3S4R434 201 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 M0R135 149 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 DTYMKP23919 212 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 TPTE2P1Q5T6R2 138 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 FBXW9Q5XUX1 488 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.54□□□□□ -0.56
SKA3-201ENST00000298260 OR1L6Q8NGR2 347 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 UBALD1Q8TB05 177 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 GPR146Q96CH1 333 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 ZNF799Q96GE5 643 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 TP53TG3Q9ULZ0 132 aa11.54□□□□□ -0.56
SKA3-201ENST00000298260 IGKV3D-11A0A0A0MRZ8 115 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 C1QTNF9P0C862 333 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms