RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PRR7Q8TB68 274 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 TMEM171Q8WVE6 324 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 RND1Q92730 232 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 SMIM8Q96KF7 97 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 VKORC1Q9BQB6 163 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 CNTNAP3Q9BZ76 1288 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 F8W036 122 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 IFNL4K9M1U5 179 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 TUSC2O75896 110 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 PTBP3O95758 552 aaKnown RBP12.92□□□□□ -0.34
SF3B4-201ENST00000271628 RCC1P18754 421 aaPredicted RBP12.92□□□□□ -0.34
SF3B4-201ENST00000271628 PTAFRP25105 342 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 BLOC1S1P78537 153 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 FLI1Q01543 452 aaPredicted RBP12.92□□□□□ -0.34
SF3B4-201ENST00000271628 LRP11Q86VZ4 500 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 PUSL1Q8N0Z8 303 aaKnown RBP12.92□□□□□ -0.34
SF3B4-201ENST00000271628 LRTM2Q8N967 370 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 OR10J5Q8NHC4 309 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 SEC11CQ9BY50 192 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 UFSP2Q9NUQ7 469 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 TAAR3PQ9P1P4 343 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 OR14J1Q9UGF5 321 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 TRAPPC2LQ9UL33 140 aa12.92□□□□□ -0.34
SF3B4-201ENST00000271628 C3orf80F5H4A9 247 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 ADCYAP1P18509 176 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 KCNJ3P48549 501 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 CASP6P55212 293 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 S100A10P60903 97 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 KLRB1Q12918 225 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 IAH1Q2TAA2 248 aaPredicted RBP12.91□□□□□ -0.34
SF3B4-201ENST00000271628 SMIM21Q3B7S5 101 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 PHLDA2Q53GA4 152 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 PCSK4Q6UW60 755 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 SPAG16Q8N0X2 631 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 NUP37Q8NFH4 326 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 OR10Z1Q8NGY1 313 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 CABLES2Q9BTV7 478 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 TAF9BQ9HBM6 251 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 OR2S2Q9NQN1 319 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 NDRG3Q9UGV2 375 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 WIPI2Q9Y4P8 454 aa12.91□□□□□ -0.34
SF3B4-201ENST00000271628 GPR31O00270 319 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 HKR1P10072 659 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 GNRHRP30968 328 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 CCKARP32238 428 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 CFHR2P36980 270 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 AKR1C2P52895 323 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 RND3P61587 244 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 AKR1C1Q04828 323 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 TMEM187Q14656 261 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 SMCO1Q147U7 214 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 MSMPQ1L6U9 139 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 MST1LQ2TV78 715 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 VHLLQ6RSH7 139 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 C22orf34Q6ZV56 151 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 PLPPR1Q8TBJ4 325 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 KIRREL1Q96J84 757 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 MBNL3Q9NUK0 354 aaKnown RBP12.9□□□□□ -0.34
SF3B4-201ENST00000271628 UQCC1Q9NVA1 299 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 MAP1BP46821 2468 aaKnown RBP12.9□□□□□ -0.34
SF3B4-201ENST00000271628 RP1L1Q8IWN7 2480 aaPredicted RBP12.9□□□□□ -0.34
SF3B4-201ENST00000271628 IGKV1-6A0A0C4DH72 117 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 NPIPB11E5RHQ5 1161 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 DLL1O00548 723 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 JTBO76095 146 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 SNAPINO95295 136 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 GAPDHP04406 335 aaKnown RBP12.9□□□□□ -0.34
SF3B4-201ENST00000271628 OR5AC1P0C628 307 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 GUCA2BQ16661 112 aa12.9□□□□□ -0.34
SF3B4-201ENST00000271628 SHANK1Q9Y566 2161 aa12.9□□□□□ -0.35
SF3B4-201ENST00000271628 H7C2Y5 167 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 K7EPK0 472 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 WNT9BO14905 357 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 MPPED1O15442 326 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 DEDDO75618 318 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 RPL12P30050 165 aaKnown RBP12.89□□□□□ -0.35
SF3B4-201ENST00000271628 CAV2P51636 162 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 SLC35E4Q6ICL7 350 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 LIAT1Q6ZQX7 453 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 LDLRAD3Q86YD5 345 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 FAM90A1Q86YD7 464 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 CMTM1Q8IZ96 169 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 LGI3Q8N145 548 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 FAM71E2Q8N5Q1 922 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 SECTM1Q8WVN6 248 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 TREM1Q9NP99 234 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 OR2W1Q9Y3N9 320 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 PSPNO60542 156 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 S100GP29377 79 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 SULT1A2P50226 295 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 SRPXP78539 464 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 RPL7L1Q6DKI1 246 aaKnown RBP12.89□□□□□ -0.35
SF3B4-201ENST00000271628 DHRS7BQ6IAN0 325 aaPredicted RBP12.89□□□□□ -0.35
SF3B4-201ENST00000271628 LILRB1Q8NHL6 650 aaPredicted RBP12.89□□□□□ -0.35
SF3B4-201ENST00000271628 LRRC29Q8WV35 223 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 PLEKHA2Q9HB19 425 aa12.89□□□□□ -0.35
SF3B4-201ENST00000271628 SEBOXQ9HB31 216 aaPredicted RBP12.89□□□□□ -0.35
SF3B4-201ENST00000271628 FBXO9Q9UK97 447 aaPredicted RBP12.89□□□□□ -0.35
SF3B4-201ENST00000271628 C3orf85A0A1B0GTC6 90 aa12.88□□□□□ -0.35
SF3B4-201ENST00000271628 TMEM30CPA0ZSE6 113 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms