RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PARP11Q9NR21 331 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 PAGE4O60829 102 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 EIF3IQ13347 325 aaKnown RBP12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 ETFBKMTQ8IXQ9 262 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 GNRHR2Q96P88 292 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 C19orf67A6NJJ6 358 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 OVCH2Q7RTZ1 564 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 CDKN2AP42771 156 aaKnown RBP12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 HIST1H1AQ02539 215 aaPredicted RBP12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 DNASE2BQ8WZ79 361 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 LPAR2Q9HBW0 351 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 LTBP3Q9NS15 1303 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 RGPD5Q99666 1765 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 LINC01553A4QN01 128 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 ZBTB42B2RXF5 422 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 H7C1H1 209 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 FOXF1Q12946 379 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 KIF13BQ9NQT8 1826 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 C1orf220Q5T0J3 134 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 TEX37Q96LM6 180 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 TMEM262E9PQX1 116 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 SYNGR1O43759 233 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 GPR82Q96P67 336 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 OR51B2Q9Y5P1 312 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 SCN11AQ9UI33 1791 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 FTH1P19P0C7X4 201 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 TMIGD3P0DMS9 266 aaPredicted RBP12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 NPFFR1Q9GZQ6 430 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 TRBV7-9A0A0J9YWB2 115 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 PSMG4Q5JS54 123 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 BHLHA15Q7RTS1 189 aaPredicted RBP12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 OR52M1Q8NGK5 317 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 TCTN3Q6NUS6 607 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 LINC00470Q9BZP3 86 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 C7orf77A4D0Y5 90 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 CFDP00746 253 aaPredicted RBP12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 ANKRD37Q7Z713 158 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 C1orf174Q8IYL3 243 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 WDFY2Q96P53 400 aa12.3□□□□□ -0.44
CCDC88A-201ENST00000263630 C7orf71A4D174 169 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 SBK3P0C264 359 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 FGF9P31371 208 aaPredicted RBP12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 FCGR2BP31994 310 aaPredicted RBP12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 MC5RP33032 325 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 NDUFS8O00217 210 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 UPK1AO00322 258 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 OR2A4O95047 310 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 FAM106CPP0CH98 169 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 GUCA2BQ16661 112 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 OR2A7Q96R45 310 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 RARRES2Q99969 163 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 MARVELD1Q9BSK0 173 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 A0A1B0GUL6 1792 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 LAMB1P07942 1786 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 CYB5R3P00387 301 aaPredicted RBP12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 CNTFRP26992 372 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 SELENOTP62341 195 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 ZDHHC8Q9ULC8 765 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 COL2A1P02458 1487 aaPredicted RBP12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 IGKV6D-21A0A0A0MT36 114 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 TMEM210A6NLX4 147 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 J3QR06 171 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 ADAMTS5Q9UNA0 930 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 TRA2AQ13595 282 aaKnown RBP eCLIP12.29□□□□□ -0.442e-6■■■■■ 27.7
CCDC88A-201ENST00000263630 ZNF56Q15929 161 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 SEZ6L2Q6UXD5 910 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 OR6X1Q8NH79 312 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 HDHD3Q9BSH5 251 aaPredicted RBP12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 NPVFQ9HCQ7 196 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 MYOM1P52179 1685 aa12.29□□□□□ -0.44
CCDC88A-201ENST00000263630 SLC17A3O00476 420 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 SNRPD3P62318 126 aaKnown RBP12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 SPRED3Q2MJR0 410 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 NT5CQ8TCD5 201 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 ORAI1Q96D31 301 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 IGKV3D-15A0A087WSY6 115 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 MED19A0JLT2 244 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 HOXA3O43365 443 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 IGKV3-15P01624 115 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 ZNF688P0C7X2 276 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 F11RQ9Y624 299 aaKnown RBP12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 OR4D5Q8NGN0 318 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 MS4A7Q9GZW8 240 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 SOD3P08294 240 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 LHX8Q68G74 356 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 ZNF275Q9NSD4 429 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 HSF4Q9ULV5 492 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 DOCK8Q8NF50 2099 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 IGKV3D-11A0A0A0MRZ8 115 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 PPM1DO15297 605 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 IGKV3-11P04433 115 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 CTDSPLO15194 276 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 GFRA1P56159 465 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 CDS2O95674 445 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 WNT1P04628 370 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 WDR38Q5JTN6 314 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 SLC23A3Q6PIS1 610 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 A1L4Q6 167 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 ANOS1P23352 680 aa12.28□□□□□ -0.44
CCDC88A-201ENST00000263630 ZNF770Q6IQ21 691 aaPredicted RBP12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms