RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 BLNKQ8WV28 456 aa9.37□□□□□ -0.91
CD44-201ENST00000263398 PRNDQ9UKY0 176 aa9.37□□□□□ -0.91
CD44-201ENST00000263398 AMMECR1Q9Y4X0 333 aaPredicted RBP9.37□□□□□ -0.91
CD44-201ENST00000263398 TMPRSS2O15393 492 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PAGE4O60829 102 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 ZNF253O75346 499 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PGA4P0DJD7 388 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PGA5P0DJD9 388 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PSG2P11465 335 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 RCC1P18754 421 aaPredicted RBP9.36□□□□□ -0.91
CD44-201ENST00000263398 FOXL2P58012 376 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 CEBPEQ15744 281 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 SLC25A47Q6Q0C1 308 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 H1FOOQ8IZA3 346 aaPredicted RBP9.36□□□□□ -0.91
CD44-201ENST00000263398 C11orf42Q8N5U0 333 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 TMEM252Q8N6L7 170 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 MRPL30Q8TCC3 161 aaKnown RBP9.36□□□□□ -0.91
CD44-201ENST00000263398 SSMEM1Q8WWF3 244 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 SNX22Q96L94 193 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 GOLT1BQ9Y3E0 138 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 B4E171 279 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 TSPAN7P41732 249 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 NHLH2Q02577 135 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PSG5Q15238 335 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 DPPA3Q6W0C5 159 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 OR4P4Q8NGL7 312 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 RNF7Q9UBF6 113 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PDE6DO43924 150 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PITX3O75364 302 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 CFDP00746 253 aaPredicted RBP9.36□□□□□ -0.91
CD44-201ENST00000263398 SMIM17P0DL12 118 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 MMP9P14780 707 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 COX7A1P24310 79 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 B2MP61769 119 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 MOGAT3Q86VF5 341 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PDPNQ86YL7 162 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 OR5AC2Q9NZP5 309 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 SCN4AP35499 1836 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PPIHO43447 177 aaKnown RBP9.36□□□□□ -0.91
CD44-201ENST00000263398 NPY1RP25929 384 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 FDX2Q6P4F2 183 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 SLC23A3Q6PIS1 610 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 ADIPOR1Q96A54 375 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 ANGPTL4Q9BY76 406 aa9.36□□□□□ -0.91
CD44-201ENST00000263398 PRF1P14222 555 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 G6PCP35575 357 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 MNX1P50219 401 aaPredicted RBP9.35□□□□□ -0.91
CD44-201ENST00000263398 FGF12P61328 243 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 FOXC1Q12948 553 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 CEACAM21Q3KPI0 293 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 FAM209AQ5JX71 171 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 ZNF880Q6PDB4 577 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 RAB1CQ92928 201 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 GMPPAQ96IJ6 420 aaPredicted RBP9.35□□□□□ -0.91
CD44-201ENST00000263398 PACRGQ96M98 296 aaPredicted RBP9.35□□□□□ -0.91
CD44-201ENST00000263398 CBY1Q9Y3M2 126 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 TEX50A0A1B0GTY4 177 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 MUC1P15941 1255 aaPredicted RBP9.35□□□□□ -0.91
CD44-201ENST00000263398 P2RY4P51582 365 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 ZNF273Q14593 569 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 SPNS3Q6ZMD2 512 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 GTF2H5Q6ZYL4 71 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 OR11H4Q8NGC9 324 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 AQP3Q92482 292 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 IGKV1D-42A0A075B6H8 117 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 ZNF98A6NK75 572 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 PATE3B3GLJ2 98 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 MS4A18H0YCH9 400 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 DEDDO75618 318 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 USF1P22415 310 aaPredicted RBP9.35□□□□□ -0.91
CD44-201ENST00000263398 GABRA6Q16445 453 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 TNXAQ16473 311 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 MS4A18Q3C1V0 323 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 MDP1Q86V88 176 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 SCARF2Q96GP6 870 aaPredicted RBP9.35□□□□□ -0.91
CD44-201ENST00000263398 OR2J1Q9GZK6 312 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 PIPOXQ9P0Z9 390 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 PITPNC1Q9UKF7 332 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 AKAP6Q13023 2319 aa9.35□□□□□ -0.91
CD44-201ENST00000263398 SCN10AQ9Y5Y9 1956 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 SYNGR1O43759 233 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 NHLH1Q02575 133 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 ANKRD55Q3KP44 614 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 MIOXQ9UGB7 285 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A10PA6NDY2 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A18PA6NE21 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A16PA6NEW6 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A20PA6NIJ5 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A8PA6NJQ4 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A7PA6NKC0 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A22PA8MWA6 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A12PA8MX19 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A5PA8MXJ8 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A23PA8MXZ1 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 PTBP3O95758 552 aaKnown RBP9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A15PP0C7V4 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A13PP0C7W8 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A14PP0C7W9 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM90A24PP0C7X0 464 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FCARP24071 287 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms