RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GEMIN2O14893 280 aaKnown RBP16.7■□□□□ 0.26
UPF1-201ENST00000262803 FAM106CPP0CH98 169 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 PGA4P0DJD7 388 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 PGA5P0DJD9 388 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 DYNLT3P51808 116 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 MDP1Q86V88 176 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 OR10G8Q8NGN5 311 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 OR10D4PQ8NGN7 298 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 PRSS27Q9BQR3 290 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 FSCN3Q9NQT6 498 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 KIF13BQ9NQT8 1826 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 K7N7A8 449 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 EFNB2P52799 333 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 ZNF714Q96N38 554 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 VAX2Q9UIW0 290 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 A0A1W2PQF6 199 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 TMEM218A2RU14 115 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 FTH1P19P0C7X4 201 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 RAB9AP51151 201 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 CLEC5AQ9NY25 188 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 TRIP12Q14669 1992 aaPredicted RBP16.7■□□□□ 0.26
UPF1-201ENST00000262803 IGHV4-34P06331 123 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 NPY1RP25929 384 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 MNX1P50219 401 aaPredicted RBP16.7■□□□□ 0.26
UPF1-201ENST00000262803 NANOS3P60323 173 aaKnown RBP16.7■□□□□ 0.26
UPF1-201ENST00000262803 TUSC1Q2TAM9 212 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 BSXQ3C1V8 233 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 TEPPQ6URK8 271 aa16.7■□□□□ 0.26
UPF1-201ENST00000262803 STARD6P59095 220 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 PLPPR5Q32ZL2 321 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 FAM210BQ96KR6 192 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 DOK5Q9P104 306 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 PITPNC1Q9UKF7 332 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 IGKV1-8A0A0C4DH67 115 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 UFC1Q9Y3C8 167 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 STRCP1A6NGW2 1772 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 IGF2P01344 180 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 GAPTQ8N292 157 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 IGHV1-45A0A0A0MS14 117 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 GCM2O75603 506 aaPredicted RBP16.69■□□□□ 0.26
UPF1-201ENST00000262803 SPINK9Q5DT21 86 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 SNRNP40Q96DI7 357 aaKnown RBP16.69■□□□□ 0.26
UPF1-201ENST00000262803 TXNDC17Q9BRA2 123 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 PIMREGQ9BSJ6 248 aa16.69■□□□□ 0.26
UPF1-201ENST00000262803 FAM74A7A6NL05 159 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 IGKV1D-16P01601 117 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 SPINK2P20155 84 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 RPL31P62899 125 aaKnown RBP16.68■□□□□ 0.26
UPF1-201ENST00000262803 OR4X1Q8NH49 305 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 SLC25A33Q9BSK2 321 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 KIAA1324LA8MWY0 1029 aaPredicted RBP16.68■□□□□ 0.26
UPF1-201ENST00000262803 CFDP00746 253 aaPredicted RBP16.68■□□□□ 0.26
UPF1-201ENST00000262803 NAT2P11245 290 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 CTSSP25774 331 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 MMDQ15546 238 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 ABHD3Q8WU67 409 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 SIRT7Q9NRC8 400 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 HIGD1AQ9Y241 93 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 VSIG4Q9Y279 399 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 C7orf66A4D0T2 115 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 FGF8P55075 233 aaPredicted RBP16.68■□□□□ 0.26
UPF1-201ENST00000262803 TOMM20LQ6UXN7 152 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 HOGA1Q86XE5 327 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 STPG2Q8N412 459 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 RGPD4Q7Z3J3 1758 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 HIKESHIQ53FT3 197 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 IL19Q9UHD0 177 aa16.68■□□□□ 0.26
UPF1-201ENST00000262803 C11orf94C9JXX5 98 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 J3QW42 95 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 MRGPRGQ86SM5 289 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 MRPL24Q96A35 216 aaKnown RBP16.67■□□□□ 0.26
UPF1-201ENST00000262803 UCN2Q96RP3 112 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 ISLRO14498 428 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 PRDX2P32119 198 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 SELENOTP62341 195 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 MGAT2Q10469 447 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 PSG5Q15238 335 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 CEACAM21Q3KPI0 293 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 ADAT3Q96EY9 351 aaPredicted RBP16.67■□□□□ 0.26
UPF1-201ENST00000262803 IFT22Q9H7X7 185 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 KLHDC2Q9Y2U9 406 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 MPDU1O75352 247 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 FSTP19883 344 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 COL8A1P27658 744 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 ZNF343Q6P1L6 599 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 OR2T10Q8NGZ9 312 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 SMDT1Q9H4I9 107 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 LIPGQ9Y5X9 500 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 SMPD2O60906 423 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 RBM11P57052 281 aaKnown RBP16.67■□□□□ 0.26
UPF1-201ENST00000262803 EBLN2Q6P2I7 272 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 ABHD14BQ96IU4 210 aa16.67■□□□□ 0.26
UPF1-201ENST00000262803 CTXND1A0A1B0GTU2 59 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 ZNF205O95201 554 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 HIST1H1BP16401 226 aaKnown RBP16.66■□□□□ 0.26
UPF1-201ENST00000262803 SLC35E3Q7Z769 313 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 VPS25Q9BRG1 176 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 ABHD14AQ9BUJ0 271 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 COL4A5P29400 1685 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 COX5BP10606 129 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms