RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 LDLRAD4O15165 306 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 GPR6P46095 362 aaPredicted RBP9.85□□□□□ -0.83
VPS4A-201ENST00000254950 CAMLGP49069 296 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 HOXA1P49639 335 aaPredicted RBP9.85□□□□□ -0.83
VPS4A-201ENST00000254950 HES1Q14469 280 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 RSPO1Q2MKA7 263 aaPredicted RBP9.85□□□□□ -0.83
VPS4A-201ENST00000254950 SHEQ5VZ18 495 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 MBNL2Q5VZF2 373 aaKnown RBP9.85□□□□□ -0.83
VPS4A-201ENST00000254950 OR5M8Q8NGP6 311 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 AKR1E2Q96JD6 320 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 HIPK2Q9H2X6 1198 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 CEP295Q9C0D2 2601 aa9.85□□□□□ -0.83
VPS4A-201ENST00000254950 E5RGE8 158 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 ZG16O60844 167 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 KRASP01116 189 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 IGHV3-7P01780 117 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 TMUB2Q71RG4 321 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 OVCH2Q7RTZ1 564 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 TBC1D26Q86UD7 250 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 SLC35G3Q8N808 338 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 ADAD2Q8NCV1 583 aaKnown RBP9.84□□□□□ -0.83
VPS4A-201ENST00000254950 MITD1Q8WV92 249 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 WFIKKN1Q96NZ8 548 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 GHITMQ9H3K2 345 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 GPR132Q9UNW8 380 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 NSG2Q9Y328 171 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 HBZP02008 142 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 MUC1P15941 1255 aaPredicted RBP9.84□□□□□ -0.83
VPS4A-201ENST00000254950 AKIRIN2Q53H80 203 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 LILRB4Q8NHJ6 448 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 PCNPQ8WW12 178 aaKnown RBP9.84□□□□□ -0.83
VPS4A-201ENST00000254950 ST6GAL2Q96JF0 529 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 PLEKHA2Q9HB19 425 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 TREM1Q9NP99 234 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 SLC2A8Q9NY64 477 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 TAS2R3Q9NYW6 316 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 IGKV1-12A0A0C4DH73 117 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 IGHV1-69-2A0A0G2JMI3 117 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 I3L521 148 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 IGKV1D-12P01611 117 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 MRPS11P82912 194 aaKnown RBP9.84□□□□□ -0.83
VPS4A-201ENST00000254950 GGNBP1Q5YKI7 109 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 LIAT1Q6ZQX7 453 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 ZBTB34Q8NCN2 500 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 SHOXO15266 292 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 ADAP1O75689 374 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 VSIG10L2P0DP72 767 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 COX6B1P14854 86 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 LPAR6P43657 344 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 CEBPGP53567 150 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 STOML3Q8TAV4 291 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 ADTRPQ96IZ2 230 aa9.84□□□□□ -0.83
VPS4A-201ENST00000254950 IGKV1-27A0A075B6S5 117 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 B8ZZF3 427 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 ST8SIA5O15466 376 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 FCGR3BO75015 233 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 CXCL3P19876 107 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 PPP1CCP36873 323 aaKnown RBP9.83□□□□□ -0.84
VPS4A-201ENST00000254950 RPS16P62249 146 aaKnown RBP9.83□□□□□ -0.84
VPS4A-201ENST00000254950 GCSAMQ8N6F7 178 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 CACFD1Q9UGQ2 172 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 FBXO7Q9Y3I1 522 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 FBXO24O75426 580 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF266Q14584 549 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 CLINT1Q14677 625 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 LRP11Q86VZ4 500 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 RBPMSQ93062 196 aaKnown RBP9.83□□□□□ -0.84
VPS4A-201ENST00000254950 NRIP2Q9BQI9 281 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 IL36RNQ9UBH0 155 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 SSX5O60225 188 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 B3GALNT1O75752 331 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 RAB11AP62491 216 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 GNB2P62879 340 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 SLC35E4Q6ICL7 350 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 C11orf87Q6NUJ2 197 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 ALKAL2Q6UX46 152 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 TMEM217Q8N7C4 229 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 MOB3AQ96BX8 217 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 MAGT1Q9H0U3 335 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 SDHAF2Q9NX18 166 aa9.83□□□□□ -0.84
VPS4A-201ENST00000254950 ACACBO00763 2458 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF503-AS2A6NEH8 195 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 SSSCA1O60232 199 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 GNLYP22749 145 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 CD200P41217 278 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 PRRX1P54821 245 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF529Q6P280 563 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 WDR82Q6UXN9 313 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 FAM90A1Q86YD7 464 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 LRRC20Q8TCA0 184 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 TSNAXQ99598 290 aaKnown RBP9.82□□□□□ -0.84
VPS4A-201ENST00000254950 TMEM106BQ9NUM4 274 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 CYB5BO43169 146 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 SCGB2A1O75556 95 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 DFFBO76075 338 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 HRASP01112 189 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 COX7A1P24310 79 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 RPL12P30050 165 aaKnown RBP9.82□□□□□ -0.84
VPS4A-201ENST00000254950 GLIPR1P48060 266 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 OR1L1Q8NH94 360 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms