RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 IGKV1D-13A0A0B4J2D9 117 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 IGKV1-13P0DP09 117 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 LMO1P25800 156 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 APOBEC3AP31941 199 aaPredicted RBP18.98■□□□□ 0.63
CDX1-201ENST00000231656 CEBPDP49716 269 aaPredicted RBP18.98■□□□□ 0.63
CDX1-201ENST00000231656 MZT1Q08AG7 82 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 ZNF672Q499Z4 452 aaPredicted RBP18.98■□□□□ 0.63
CDX1-201ENST00000231656 LIAT1Q6ZQX7 453 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 SLC51BQ86UW2 128 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 LDLRAD3Q86YD5 345 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 FAM185AQ8N0U4 392 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 UFSP2Q9NUQ7 469 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 CACNA1DQ01668 2161 aa18.97■□□□□ 0.63
CDX1-201ENST00000231656 LRRK2Q5S007 2527 aa18.97■□□□□ 0.63
CDX1-201ENST00000231656 LINC00862A6NCI5 91 aa18.97■□□□□ 0.63
CDX1-201ENST00000231656 PTBP3O95758 552 aaKnown RBP18.97■□□□□ 0.63
CDX1-201ENST00000231656 CD200P41217 278 aa18.97■□□□□ 0.63
CDX1-201ENST00000231656 RND3P61587 244 aa18.97■□□□□ 0.63
CDX1-201ENST00000231656 HOXA4Q00056 320 aaPredicted RBP18.97■□□□□ 0.63
CDX1-201ENST00000231656 GGNBP1Q5YKI7 109 aa18.97■□□□□ 0.63
CDX1-201ENST00000231656 MSI2Q96DH6 328 aaKnown RBP18.97■□□□□ 0.63
CDX1-201ENST00000231656 OR14J1Q9UGF5 321 aa18.97■□□□□ 0.63
CDX1-201ENST00000231656 LRBAP50851 2863 aa18.97■□□□□ 0.63
CDX1-201ENST00000231656 MPPED1O15442 326 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 SPRY3O43610 288 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 PRSS54Q6PEW0 395 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 H1FOOQ8IZA3 346 aaPredicted RBP18.96■□□□□ 0.63
CDX1-201ENST00000231656 GLYATL2Q8WU03 294 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 SECTM1Q8WVN6 248 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 C18orf12Q96KH6 178 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 GSX2Q9BZM3 304 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 WIPI2Q9Y4P8 454 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 ARFGEF3Q5TH69 2177 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 NPIPB11E5RHQ5 1161 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 BCL2L11O43521 198 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 ZNF565Q8N9K5 539 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 INO80EQ8NBZ0 244 aaPredicted RBP18.96■□□□□ 0.63
CDX1-201ENST00000231656 DCUN1D4Q92564 292 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 KIRREL1Q96J84 757 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 SLC5A7Q9GZV3 580 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 MBNL3Q9NUK0 354 aaKnown RBP18.96■□□□□ 0.63
CDX1-201ENST00000231656 GLS2Q9UI32 602 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 ZDHHC8Q9ULC8 765 aa18.96■□□□□ 0.63
CDX1-201ENST00000231656 TRAV39A0A0B4J263 110 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 ANKRD34BA5PLL1 514 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 GPR31O00270 319 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 PSPNO60542 156 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 IFNA21P01568 189 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 IGHV1-46P01743 117 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 RAB32Q13637 225 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 EFNB3Q15768 340 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 IAH1Q2TAA2 248 aaPredicted RBP18.95■□□□□ 0.62
CDX1-201ENST00000231656 ZNF818PQ6ZRF7 136 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 OR2V2Q96R30 315 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 TP53RKQ96S44 253 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 OR5AC2Q9NZP5 309 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 GSKIPQ9P0R6 139 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 KLF2Q9Y5W3 355 aaPredicted RBP18.95■□□□□ 0.62
CDX1-201ENST00000231656 AUP1Q9Y679 476 aa18.95■□□□□ 0.62
CDX1-201ENST00000231656 KANTRA0A1W2PQU2 76 aa18.94■□□□□ 0.62
CDX1-201ENST00000231656 PHF1O43189 567 aaPredicted RBP18.94■□□□□ 0.62
CDX1-201ENST00000231656 MEX3BQ6ZN04 569 aaKnown RBP18.94■□□□□ 0.62
CDX1-201ENST00000231656 OR10J5Q8NHC4 309 aa18.94■□□□□ 0.62
CDX1-201ENST00000231656 SCARB1Q8WTV0 552 aa18.94■□□□□ 0.62
CDX1-201ENST00000231656 PCNPQ8WW12 178 aaKnown RBP18.94■□□□□ 0.62
CDX1-201ENST00000231656 RRNAD1Q96FB5 475 aaKnown RBP18.94■□□□□ 0.62
CDX1-201ENST00000231656 TRAPPC2LQ9UL33 140 aa18.94■□□□□ 0.62
CDX1-201ENST00000231656 C3orf85A0A1B0GTC6 90 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 hCG_1807616A0A1W2PRN6 198 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 KCNAB3O43448 404 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 UBA52P62987 128 aaKnown RBP18.93■□□□□ 0.62
CDX1-201ENST00000231656 HMGN3Q15651 99 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 MST1LQ2TV78 715 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 SPRNQ5BIV9 151 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 LYZL2Q7Z4W2 148 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 TBC1D26Q86UD7 250 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 LGI3Q8N145 548 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 LHFPL5Q8TAF8 219 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 CCL28Q9NRJ3 127 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 OR2W1Q9Y3N9 320 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 B9A039 149 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 RAB14P61106 215 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 SMIM21Q3B7S5 101 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 ALKAL2Q6UX46 152 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 LRRC29Q8WV35 223 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 ST8SIA2Q92186 375 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 MEGF10Q96KG7 1140 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 OR1A1Q9P1Q5 309 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 IL19Q9UHD0 177 aa18.93■□□□□ 0.62
CDX1-201ENST00000231656 TMEM30CPA0ZSE6 113 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 C17orf100A8MU93 164 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 SPDEFO95238 335 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 C6orf183Q5T699 404 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 SLC35E4Q6ICL7 350 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 FAM219AQ8IW50 185 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 MUC15Q8N387 334 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 OR10Z1Q8NGY1 313 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 ITLN1Q8WWA0 313 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 DCHS2Q6V1P9 2916 aa18.92■□□□□ 0.62
CDX1-201ENST00000231656 IFNL4K9M1U5 179 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms