RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CA6P23280 308 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 GLP1RP43220 463 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 EIF5AL1Q6IS14 154 aaKnown RBP9.08□□□□□ -0.96
USP28-201ENST00000003302 MRPL30Q8TCC3 161 aaKnown RBP9.08□□□□□ -0.96
USP28-201ENST00000003302 CLDN23Q96B33 292 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 TAAR9Q96RI9 348 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 REPIN1Q9BWE0 567 aaKnown RBP9.08□□□□□ -0.96
USP28-201ENST00000003302 SUCNR1Q9BXA5 334 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 LYRM2Q9NU23 88 aaPredicted RBP9.08□□□□□ -0.96
USP28-201ENST00000003302 AURKAIP1Q9NWT8 199 aaPredicted RBP9.08□□□□□ -0.96
USP28-201ENST00000003302 GNG13Q9P2W3 67 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 TCFL5Q9UL49 500 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 VAMP5O95183 116 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 IGHV2-70P01814 119 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 FUT6P51993 359 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 NDUFA6P56556 154 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 CNN3Q15417 329 aaKnown RBP9.08□□□□□ -0.96
USP28-201ENST00000003302 SUMF2Q8NBJ7 301 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 WDYHV1Q96HA8 205 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 GGACTQ9BVM4 153 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 C1QTNF5Q9BXJ0 243 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 FOXJ2Q9P0K8 574 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 RNF150Q9ULK6 438 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 NTN3O00634 580 aaPredicted RBP9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST1H2BKO60814 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 IGHV3-13P01766 116 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 IGHV3-7P01780 117 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST1H2BJP06899 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST1H2BOP23527 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST1H2BBP33778 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST1H2BDP58876 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST1H2BCP62807 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 RTP5Q14D33 572 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST2H2BEQ16778 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.08□□□□□ -0.96
USP28-201ENST00000003302 OR2V1Q8NHB1 315 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST1H2BHQ93079 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST1H2BNQ99877 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 HIST1H2BMQ99879 126 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 RPL36A-HNRNPH2H7BZ11 118 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 CA11O75493 328 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 ID3Q02535 119 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 COLCA1Q6ZS62 124 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 WDR54Q9H977 334 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 SOX15O60248 233 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 P04436 131 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 ZNF16P17020 682 aaPredicted RBP9.07□□□□□ -0.96
USP28-201ENST00000003302 TAGLN2P37802 199 aaKnown RBP9.07□□□□□ -0.96
USP28-201ENST00000003302 DPPA2Q7Z7J5 298 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 WFIKKN1Q96NZ8 548 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 SCAF4O95104 1147 aaKnown RBP9.07□□□□□ -0.96
USP28-201ENST00000003302 SRD5A2P31213 254 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 Q6ZR03 302 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 CLDND2Q8NHS1 167 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 TMEM56Q96MV1 263 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 NOSIPQ9Y314 301 aaKnown RBP9.07□□□□□ -0.96
USP28-201ENST00000003302 TMEM56-RWDD3S4R434 201 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 CNOT4O95628 575 aaKnown RBP9.07□□□□□ -0.96
USP28-201ENST00000003302 EGR1P18146 543 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 ELLP55199 621 aaPredicted RBP9.07□□□□□ -0.96
USP28-201ENST00000003302 IL13RA2Q14627 380 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 CT55Q8WUE5 264 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 LRFN1Q9P244 771 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 ATPIF1Q9UII2 106 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 WDR1O75083 606 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 TUSC2O75896 110 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 SLC34A2O95436 690 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 LHX2P50458 406 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 ZNF585BQ52M93 769 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 RNFT1Q5M7Z0 435 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 FAM90A2PQ658T7 463 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 ZNF561Q8N587 486 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 OR1J1Q8NGS3 322 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 SGCZQ96LD1 299 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 DUSP23Q9BVJ7 150 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 TMED3Q9Y3Q3 217 aa9.07□□□□□ -0.96
USP28-201ENST00000003302 BORCS7-ASMTA0A0B4J1R7 106 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 NUDT19A8MXV4 375 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 SIRPB1O00241 398 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 WNT9BO14905 357 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 MT-CO3P00414 261 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 RAB1AP62820 205 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 SRSF6Q13247 344 aaKnown RBP9.06□□□□□ -0.96
USP28-201ENST00000003302 KIAA0141Q14154 515 aaPredicted RBP9.06□□□□□ -0.96
USP28-201ENST00000003302 GNMTQ14749 295 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 TESK1Q15569 626 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 ZNF826PQ6ZT77 177 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 ZNF429Q86V71 674 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 NECAP1Q8NC96 275 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 CACNG5Q9UF02 275 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 IL17BQ9UHF5 180 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 ZNF318Q5VUA4 2279 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 A0A087WZY1 265 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 CYB5BO43169 146 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 FRZBQ92765 325 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 CPNE4Q96A23 557 aaPredicted RBP9.06□□□□□ -0.96
USP28-201ENST00000003302 SPSB4Q96A44 273 aa9.06□□□□□ -0.96
USP28-201ENST00000003302 THOC3Q96J01 351 aaKnown RBP9.06□□□□□ -0.96
USP28-201ENST00000003302 METTL1Q9UBP6 276 aaKnown RBP9.06□□□□□ -0.96
USP28-201ENST00000003302 MRPS17Q9Y2R5 130 aaKnown RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms