RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 RAB7AP51149 207 aa11.04□□□□□ -0.64
LINC00339-211ENST00000641009 RPS11P62280 158 aaKnown RBP eCLIP11.04□□□□□ -0.64
LINC00339-211ENST00000641009 SLC22A6Q4U2R8 563 aa11.04□□□□□ -0.64
LINC00339-211ENST00000641009 ATAD3CQ5T2N8 411 aa11.04□□□□□ -0.64
LINC00339-211ENST00000641009 DMKNQ6E0U4 476 aaPredicted RBP11.04□□□□□ -0.64
LINC00339-211ENST00000641009 FAM53AQ6NSI3 398 aaPredicted RBP11.04□□□□□ -0.64
LINC00339-211ENST00000641009 ZNF329Q86UD4 541 aa11.04□□□□□ -0.64
LINC00339-211ENST00000641009 C5orf56Q8N8D9 126 aa11.04□□□□□ -0.64
LINC00339-211ENST00000641009 OR10A7Q8NGE5 316 aa11.04□□□□□ -0.64
LINC00339-211ENST00000641009 CCDC107Q8WV48 283 aa11.04□□□□□ -0.64
LINC00339-211ENST00000641009 TRAV8-7A0A075B6U6 113 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 PNMA8CA0A1B0GUJ8 204 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 A0A1W2PPK0 400 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 TMEM30CPA0ZSE6 113 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 PSMB11A5LHX3 300 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 C15orf65H3BRN8 121 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 IGKV1D-33P01593 117 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 IGKV1-33P01594 117 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 REG1BP48304 166 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 MPV17LQ2QL34 196 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 SLC16A12Q6ZSM3 486 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 LINC00596Q86U02 117 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 OR8H3Q8N146 312 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 ZNF485Q8NCK3 441 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 NEK7Q8TDX7 302 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 ARL11Q969Q4 196 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 TMEM80Q96HE8 168 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 PGLYRP3Q96LB9 341 aa11.03□□□□□ -0.64
LINC00339-211ENST00000641009 NOL4LQ96MY1 436 aaPredicted RBP11.03□□□□□ -0.64
LINC00339-211ENST00000641009 PAK1IP1Q9NWT1 392 aaPredicted RBP11.03□□□□□ -0.64
LINC00339-211ENST00000641009 IGHV3-43A0A0B4J1X8 118 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 IGHV3-72A0A0B4J1Y9 119 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 SDCBPO00560 298 aaPredicted RBP11.02□□□□□ -0.65
LINC00339-211ENST00000641009 HSD17B6O14756 317 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 IGHV3-43DP0DP04 118 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 GTF2F2P13984 249 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 GZMHP20718 246 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 LOXL3P58215 753 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 ADARB1P78563 741 aaKnown RBP11.02□□□□□ -0.65
LINC00339-211ENST00000641009 Q499Y3 187 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 TTC23Q5W5X9 447 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 SETD9Q8NE22 299 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 GGHQ92820 318 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 OR14A2Q96R54 314 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 CHCHD3Q9NX63 227 aaKnown RBP11.02□□□□□ -0.65
LINC00339-211ENST00000641009 CKLFQ9UBR5 152 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 LINC00527Q9UJ94 153 aa11.02□□□□□ -0.65
LINC00339-211ENST00000641009 IGHV1-3A0A0C4DH29 117 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 CCRL2O00421 344 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 ZNF780AO75290 641 aaPredicted RBP11.01□□□□□ -0.65
LINC00339-211ENST00000641009 GPX5O75715 221 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 SLC35A2P78381 396 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 ZNF816Q0VGE8 651 aaPredicted RBP11.01□□□□□ -0.65
LINC00339-211ENST00000641009 ST3GAL4Q11206 333 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 YIF1BQ5BJH7 314 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 ZNF497Q6ZNH5 498 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 MOB3BQ86TA1 216 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 DHRSXQ8N5I4 330 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 MUL1Q969V5 352 aa11.01□□□□□ -0.65
LINC00339-211ENST00000641009 MRPS28Q9Y2Q9 187 aaKnown RBP11.01□□□□□ -0.65
LINC00339-211ENST00000641009 TRBV5-7A0A0A0MS05 114 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 SERPINE3A8MV23 424 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 AIPO00170 330 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 FGF16O43320 207 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 MPIG6BO95866 241 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 MT-ND4P03905 459 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 GAPDHP04406 335 aaKnown RBP11□□□□□ -0.65
LINC00339-211ENST00000641009 GNAO1P09471 354 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 FSTP19883 344 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 MED21Q13503 144 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 DOC2BQ14184 412 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 GLIPR1L1Q6UWM5 242 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 C18orf65Q6ZTR6 163 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 JAGN1Q8N5M9 183 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 OR52M1Q8NGK5 317 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 CYYR1Q96J86 154 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 GFOD1Q9NXC2 390 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 DNAH9Q9NYC9 4486 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 LINC01548A6NM66 108 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 SLC31A2O15432 143 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 ORC5O43913 435 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 MAS1P04201 325 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 GPR176Q14439 515 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 SYT6Q5T7P8 510 aaPredicted RBP11□□□□□ -0.65
LINC00339-211ENST00000641009 AWAT2Q6E213 333 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 LAIR2Q6ISS4 152 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 ETV3LQ6ZN32 361 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 STX19Q8N4C7 294 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 LINC00311Q8N616 119 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 PACRGLQ8N7B6 248 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 LINC00482Q8N8I6 264 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 OR4K15Q8NH41 348 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 CHPT1Q8WUD6 406 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 RBMXL1Q96E39 390 aaKnown RBP11□□□□□ -0.65
LINC00339-211ENST00000641009 RCC1LQ96I51 464 aaKnown RBP11□□□□□ -0.65
LINC00339-211ENST00000641009 EAF1Q96JC9 268 aaPredicted RBP11□□□□□ -0.65
LINC00339-211ENST00000641009 BANF2Q9H503 90 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 RCC2Q9P258 522 aaKnown RBP11□□□□□ -0.65
LINC00339-211ENST00000641009 TRAPPC2LQ9UL33 140 aa11□□□□□ -0.65
LINC00339-211ENST00000641009 NCBP2LA6PVI3 153 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms