RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 HLA-AP01891 365 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PTBP1P26599 531 aaKnown RBP eCLIP4.38□□□□□ -1.713e-7■■■■□ 20.5
SCN1A-218ENST00000640036 COL19A1Q14993 1142 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 RPUSD3Q6P087 351 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 NR2C2APQ86WQ0 139 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TCTEX1D1Q8N7M0 179 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 OR2T10Q8NGZ9 312 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ACTR3CQ9C0K3 210 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 SPNS1Q9H2V7 528 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM38BQ9NVV0 291 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 FAM53CQ9NYF3 392 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 KPTNQ9Y664 436 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 LTBP1Q14766 1721 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PLXND1Q9Y4D7 1925 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF646O15015 1829 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 A0A1B0GUS0 222 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 OOEPA6NGQ2 149 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 LIPT2A6NK58 231 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF815PA8K554 130 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 GATCO43716 136 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TIAF1O95411 115 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 KRASP01116 189 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TYMSP04818 313 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ACSM4P0C7M7 580 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 CA5AP35218 305 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ACAA2P42765 397 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TFPI2P48307 235 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ERVFC1-1P60608 527 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 SSBP1Q04837 148 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 BIVMQ86UB2 503 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PARP16Q8N5Y8 322 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ADAD2Q8NCV1 583 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 CXorf58Q96LI9 332 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PRELID3AQ96N28 172 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 METTL26Q96S19 204 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 CCL13Q99616 98 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 CLEC7AQ9BXN2 247 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 BANF2Q9H503 90 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 MMP26Q9NRE1 261 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF354AO60765 605 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PPP1R17O96001 155 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ACAA1P09110 424 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 HIST1H1CP16403 213 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 SSMEM1Q8WWF3 244 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 GSX1Q9H4S2 264 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 GORASP2Q9H8Y8 452 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 CYB5R1Q9UHQ9 305 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ICAM5Q9UMF0 924 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 IGHV3OR15-7A0A075B7D8 119 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 K7N7A8 449 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PLPP3O14495 311 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 DHRS3O75911 302 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 KIR3DL2P43630 455 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 MTNR1BP49286 362 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 SNRPD3P62318 126 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ZIC1Q15915 447 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF141Q15928 474 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TTC32Q5I0X7 151 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 SCGB1D4Q6XE38 83 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 MRPL24Q96A35 216 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 GABARAPL1Q9H0R8 117 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PLSCR3Q9NRY6 295 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM106BQ9NUM4 274 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PSG11Q9UQ72 335 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 RFPL4AA6NLU0 287 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 F5H697 171 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 RFPL4AL1F8VTS6 287 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 K7ERU9 68 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 KLF4O43474 513 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 MVDP53602 400 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PLPPR5Q32ZL2 321 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TM4SF20Q53R12 229 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 CALHM1Q8IU99 346 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 OR5A2Q8NGI9 324 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 MUC4Q99102 2169 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 SPANXDQ9BXN6 97 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 WDR81Q562E7 1941 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 G3V3Q6 166 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 OR2A4O95047 310 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ACSM1Q08AH1 577 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ATP6V1FQ16864 119 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 C2orf68Q2NKX9 166 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 PRSS48Q7RTY5 328 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 C9orf40Q8IXQ3 194 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 MRGPRDQ8TDS7 321 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 VN1R17PQ8TDU5 208 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 RBM14Q96PK6 669 aaKnown RBP4.37□□□□□ -1.71
SCN1A-218ENST00000640036 OR2A7Q96R45 310 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 RNF2Q99496 336 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SLC17A5Q9NRA2 495 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 FRMPD3Q5JV73 1810 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 TRBV4-1A0A0J9YWV2 114 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 DCTN6O00399 190 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 PPP6CO00743 305 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SELENOFO60613 162 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 HAND1O96004 215 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SULT1A3P0DMM9 295 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SULT1A4P0DMN0 295 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 HTR1FP30939 366 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 PRDX2P32119 198 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms