RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 AANATQ16613 207 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 PAN3Q58A45 887 aaKnown RBP15.57■□□□□ 0.08
CLN3-263ENST00000637871 TIMM23BQ5SRD1 257 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 EIF5AL1Q6IS14 154 aaKnown RBP15.57■□□□□ 0.08
CLN3-263ENST00000637871 LDLRAD3Q86YD5 345 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 CMTM1Q8IZ96 169 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 GAPTQ8N292 157 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 LILRB1Q8NHL6 650 aaPredicted RBP15.57■□□□□ 0.08
CLN3-263ENST00000637871 RND1Q92730 232 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 C18orf12Q96KH6 178 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 CABLES2Q9BTV7 478 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 SFXN3Q9BWM7 321 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 SPEF1Q9Y4P9 236 aa15.57■□□□□ 0.08
CLN3-263ENST00000637871 A0A1B0GWJ7 208 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 H0YIZ8 118 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 OR5AC1P0C628 307 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 ZNF44P15621 663 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 BMP5P22003 454 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 DUSP1P28562 367 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 HLA-DRB3P79483 266 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 ZNF154Q13106 437 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 RAB32Q13637 225 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 Q6ZPA2 131 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 HSD17B13Q7Z5P4 300 aaPredicted RBP15.56■□□□□ 0.08
CLN3-263ENST00000637871 MYPOPQ86VE0 399 aaPredicted RBP15.56■□□□□ 0.08
CLN3-263ENST00000637871 RBPMSQ93062 196 aaKnown RBP15.56■□□□□ 0.08
CLN3-263ENST00000637871 MSI2Q96DH6 328 aaKnown RBP15.56■□□□□ 0.08
CLN3-263ENST00000637871 SPIN2AQ99865 258 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 SPIN2BQ9BPZ2 258 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 TLNRD1Q9H1K6 362 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 GSKIPQ9P0R6 139 aa15.56■□□□□ 0.08
CLN3-263ENST00000637871 SHOXO15266 292 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 NXPH2O95156 264 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 CECR9P0C854 216 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 LUMP51884 338 aaPredicted RBP15.55■□□□□ 0.08
CLN3-263ENST00000637871 SNTB1Q13884 538 aaKnown RBP15.55■□□□□ 0.08
CLN3-263ENST00000637871 IGSF11Q5DX21 431 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 CCDC28AQ8IWP9 274 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 GLYATL2Q8WU03 294 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 IL22RA2Q969J5 263 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 ABHD14BQ96IU4 210 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 KIRREL1Q96J84 757 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 HS3ST6Q96QI5 342 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 HES4Q9HCC6 221 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 SLC25A15Q9Y619 301 aa15.55■□□□□ 0.08
CLN3-263ENST00000637871 C3orf85A0A1B0GTC6 90 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 A0A1W2PR80 420 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 CDS2O95674 445 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 SCTP09683 121 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 BAP18Q8IXM2 172 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 RELL2Q8NC24 303 aaPredicted RBP15.54■□□□□ 0.08
CLN3-263ENST00000637871 OR10J5Q8NHC4 309 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 TMEM56Q96MV1 263 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 SLC5A7Q9GZV3 580 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 SEBOXQ9HB31 216 aaPredicted RBP15.54■□□□□ 0.08
CLN3-263ENST00000637871 TMEM56-RWDD3S4R434 201 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 IGHV2OR16-5A0A0B4J2B6 119 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 MFSD2BA6NFX1 497 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 FAM90A27PA6NNH2 459 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 E5RGE8 158 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 I3L521 148 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 HS3ST1O14792 307 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 DEDDO75618 318 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 RHBDL1O75783 438 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 LMO1P25800 156 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 GNRHRP30968 328 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 PHLDA2Q53GA4 152 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 SSX8Q7RTT4 187 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 WDR86Q86TI4 376 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 OR1S1Q8NH92 325 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 RDH5Q92781 318 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 MRPL24Q96A35 216 aaKnown RBP15.54■□□□□ 0.08
CLN3-263ENST00000637871 TMEM222Q9H0R3 208 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 SDHAF2Q9NX18 166 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 NSG2Q9Y328 171 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 OR2W1Q9Y3N9 320 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 WIPI2Q9Y4P8 454 aa15.54■□□□□ 0.08
CLN3-263ENST00000637871 MPTX1A8MV57 137 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 NUDT19A8MXV4 375 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 KRBOX1C9JBD0 128 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 BET1O15155 118 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 PHF1O43189 567 aaPredicted RBP15.53■□□□□ 0.08
CLN3-263ENST00000637871 TIMM8AO60220 97 aaPredicted RBP15.53■□□□□ 0.08
CLN3-263ENST00000637871 AGFG2O95081 481 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 S100A10P60903 97 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 TSC22D1Q15714 1073 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 TOR2AQ5JU69 321 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 GPR157Q5UAW9 335 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 ZNF497Q6ZNH5 498 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 FAM71E2Q8N5Q1 922 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 AKR1E2Q96JD6 320 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 ZNF488Q96MN9 340 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 OPN3Q9H1Y3 402 aaPredicted RBP15.53■□□□□ 0.08
CLN3-263ENST00000637871 PRR13Q9NZ81 148 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 OR5AC2Q9NZP5 309 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 IL36RNQ9UBH0 155 aa15.53■□□□□ 0.08
CLN3-263ENST00000637871 UTP20O75691 2785 aaKnown RBP15.52■□□□□ 0.08
CLN3-263ENST00000637871 IGHV1-18A0A0C4DH31 117 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 IFNL4K9M1U5 179 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 SLC33A1O00400 549 aaPredicted RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms