RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 MYOZ1Q9NP98 299 aaPredicted RBP15.35■□□□□ 0.05
CLN3-254ENST00000637050 DUX4Q9UBX2 424 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 VSIG10L2P0DP72 767 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 PLA2G2AP14555 144 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 FPR2P25090 351 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 FCGR2CP31995 323 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 NPY4RP50391 375 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 EDDM3AQ14507 147 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 SURF2Q15527 256 aaPredicted RBP15.34■□□□□ 0.05
CLN3-254ENST00000637050 GLDNQ6ZMI3 551 aaPredicted RBP15.34■□□□□ 0.05
CLN3-254ENST00000637050 FAM216BQ8N7L0 139 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 TPRX1Q8N7U7 411 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 PLEKHF2Q9H8W4 249 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 TAF9BQ9HBM6 251 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 PCDHB10Q9UN67 800 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 GPR132Q9UNW8 380 aa15.34■□□□□ 0.05
CLN3-254ENST00000637050 DIRAS3O95661 229 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 S100A1P23297 94 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 ERP29P30040 261 aaKnown RBP15.33■□□□□ 0.04
CLN3-254ENST00000637050 ECI1P42126 302 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 KCNJ8Q15842 424 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 METTL11BQ5VVY1 283 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 TMEM185AQ8NFB2 350 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 SCGB3A2Q96PL1 93 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 TMPRSS13Q9BYE2 586 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 CLEC4MQ9H2X3 399 aaPredicted RBP15.33■□□□□ 0.04
CLN3-254ENST00000637050 KCNIP1Q9NZI2 227 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 ZNF221Q9UK13 617 aa15.33■□□□□ 0.04
CLN3-254ENST00000637050 TRBV6-7A0A0A0MS04 114 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 ODAMA1E959 279 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 NPIPB11E5RHQ5 1161 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 BET1O15155 118 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 TMPRSS2O15393 492 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 NDUFA2O43678 99 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 P2RX3P56373 397 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 CR1LQ2VPA4 569 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 C6orf183Q5T699 404 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 THOC7Q6I9Y2 204 aaKnown RBP15.32■□□□□ 0.04
CLN3-254ENST00000637050 TMED4Q7Z7H5 227 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 OR13A1Q8NGR1 328 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 KIRREL1Q96J84 757 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 LURAP1Q96LR2 239 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 NEURL2Q9BR09 285 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 TMEM246Q9BRR3 403 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 KAAG1Q9UBP8 84 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 C12orf77C9JDV5 145 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 OVOL3O00110 214 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 TUSC2O75896 110 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 DAOP14920 347 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 NFYAP23511 347 aaPredicted RBP15.32■□□□□ 0.04
CLN3-254ENST00000637050 CDKN1AP38936 164 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 SP5Q6BEB4 398 aaPredicted RBP15.32■□□□□ 0.04
CLN3-254ENST00000637050 TRAT1Q6PIZ9 186 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 SLC25A42Q86VD7 318 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 MRGPRDQ8TDS7 321 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 IGFBPL1Q8WX77 278 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 MOB3AQ96BX8 217 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 SEC22CQ9BRL7 303 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 OR51J1Q9H342 316 aa15.32■□□□□ 0.04
CLN3-254ENST00000637050 MYO18BQ8IUG5 2567 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 FAM208BQ5VWN6 2430 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 HMX3A6NHT5 357 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 J3QKU1 62 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 LY6HO94772 140 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 PPYP01298 95 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 IGHV2-70P01814 119 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 TRAPPC2P0DI81 140 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 TRAPPC2BP0DI82 140 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 AADACP22760 399 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 EDDM3BP56851 147 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 CAPSLQ8WWF8 208 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 FXYD6Q9H0Q3 95 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 C5orf66Q9H5L9 145 aa15.31■□□□□ 0.04
CLN3-254ENST00000637050 GPN1Q9HCN4 374 aaPredicted RBP15.31■□□□□ 0.04
CLN3-254ENST00000637050 A1L4Q6 167 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 SNRPGP15A8MWD9 76 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 OR4E1P0C645 316 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 COX6B1P14854 86 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 UCP3P55916 312 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 BAMBIQ13145 260 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 FAHD2BQ6P2I3 314 aaPredicted RBP15.3■□□□□ 0.04
CLN3-254ENST00000637050 LYPD2Q6UXB3 125 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 H1FOOQ8IZA3 346 aaPredicted RBP15.3■□□□□ 0.04
CLN3-254ENST00000637050 ADAD2Q8NCV1 583 aaKnown RBP15.3■□□□□ 0.04
CLN3-254ENST00000637050 OR10J5Q8NHC4 309 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 IL1F10Q8WWZ1 152 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 FAHD2AQ96GK7 314 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 RTBDNQ9BSG5 229 aaPredicted RBP15.3■□□□□ 0.04
CLN3-254ENST00000637050 DCTN5Q9BTE1 182 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 OPN4Q9UHM6 478 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 CHD6Q8TD26 2715 aa15.3■□□□□ 0.04
CLN3-254ENST00000637050 ADAM20O43506 726 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 FCN3O75636 299 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 F12P00748 615 aaPredicted RBP15.29■□□□□ 0.04
CLN3-254ENST00000637050 HBZP02008 142 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 PGAM2P15259 253 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 GZMHP20718 246 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 HERV-K104P61576 105 aa15.29■□□□□ 0.04
CLN3-254ENST00000637050 RRAS2P62070 204 aaPredicted RBP15.29■□□□□ 0.04
CLN3-254ENST00000637050 ZNF626Q68DY1 528 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms