RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 CEBPDP49716 269 aaPredicted RBP13.24□□□□□ -0.29
CLN3-251ENST00000636853 ACACAQ13085 2346 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 ZNF718Q3SXZ3 478 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 PCSK4Q6UW60 755 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 ZNF818PQ6ZRF7 136 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 ZNF565Q8N9K5 539 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 PLPPR1Q8TBJ4 325 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 OR14J1Q9UGF5 321 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 TRBV6-6A0A0A6YYG2 114 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.24□□□□□ -0.29
CLN3-251ENST00000636853 HSD17B6O14756 317 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 WNT9BO14905 357 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 GLAP06280 429 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 GCH1P30793 250 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 KCNJ3P48549 501 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 PRAMEF6Q5VXH4 476 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 ZNF880Q6PDB4 577 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 MEX3BQ6ZN04 569 aaKnown RBP13.24□□□□□ -0.29
CLN3-251ENST00000636853 SPACA3Q8IXA5 215 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 C11orf53Q8IXP5 236 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 GAPTQ8N292 157 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 C18orf12Q96KH6 178 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 SLC5A7Q9GZV3 580 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 C3orf85A0A1B0GTC6 90 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 FAM74A7A6NL05 159 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 A6NLC8 198 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 TUSC2O75896 110 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 SCGB1D2O95969 90 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 CTXN2P0C2S0 81 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 KITLGP21583 273 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 TIMP3P35625 211 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 HLA-DRB3P79483 266 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 NAAAQ02083 359 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 FAM74A3Q4VXF1 159 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 KRTCAP3Q53RY4 240 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 TBC1D26Q86UD7 250 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 FAM57AQ8TBR7 257 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 IL1F10Q8WWZ1 152 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 KIRREL1Q96J84 757 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 CNTNAP3BQ96NU0 1288 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 CNTNAP3Q9BZ76 1288 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 CXXC4Q9H2H0 198 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 CCL28Q9NRJ3 127 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 UFSP2Q9NUQ7 469 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 TAS2R3Q9NYW6 316 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 TUBD1Q9UJT1 453 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 M0R1B8 84 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 SH2D1BO14796 132 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 ATG12O94817 140 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 PET100P0DJ07 73 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 ZNF146Q15072 292 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 LGI3Q8N145 548 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 PRR18Q8N4B5 295 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 LRTM2Q8N967 370 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 BPIFCQ8NFQ6 507 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 UBALD1Q8TB05 177 aa13.23□□□□□ -0.29
CLN3-251ENST00000636853 LSM5Q9Y4Y9 91 aaKnown RBP13.23□□□□□ -0.29
CLN3-251ENST00000636853 NUDT19A8MXV4 375 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 DEFA5Q01523 94 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 MSMPQ1L6U9 139 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 LDLRAD3Q86YD5 345 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 CISD2Q8N5K1 135 aaKnown RBP13.22□□□□□ -0.29
CLN3-251ENST00000636853 OR4A4PQ8NGN8 299 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 AQP10Q96PS8 301 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 MAP1BP46821 2468 aaKnown RBP13.22□□□□□ -0.29
CLN3-251ENST00000636853 RP1L1Q8IWN7 2480 aaPredicted RBP13.22□□□□□ -0.29
CLN3-251ENST00000636853 CADP27708 2225 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 H7C1Q1 480 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 HAND1O96004 215 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 TFF1P04155 84 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 HFEQ30201 348 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 TIMM23BQ5SRD1 257 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 MBNL2Q5VZF2 373 aaKnown RBP13.22□□□□□ -0.29
CLN3-251ENST00000636853 ZNF497Q6ZNH5 498 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 LRP11Q86VZ4 500 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 SVBPQ8N300 66 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 SLC35G3Q8N808 338 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 OR10J5Q8NHC4 309 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 SAV1Q9H4B6 383 aaPredicted RBP13.22□□□□□ -0.29
CLN3-251ENST00000636853 HES4Q9HCC6 221 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 CYTL1Q9NRR1 136 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 OR1A1Q9P1Q5 309 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 TRAPPC2LQ9UL33 140 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 PCDHB10Q9UN67 800 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 SSUH2Q9Y2M2 353 aa13.22□□□□□ -0.29
CLN3-251ENST00000636853 KIAA2026Q5HYC2 2103 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 GPR31O00270 319 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 TNFSF12O43508 249 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 TUBG1P23258 451 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 MDH2P40926 338 aaKnown RBP13.21□□□□□ -0.29
CLN3-251ENST00000636853 EIF2S3LQ2VIR3 472 aaKnown RBP13.21□□□□□ -0.29
CLN3-251ENST00000636853 TMEM268Q5VZI3 342 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 ZNF324BQ6AW86 544 aaPredicted RBP13.21□□□□□ -0.29
CLN3-251ENST00000636853 LURAP1LQ8IV03 231 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 FAM185AQ8N0U4 392 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 FAM169BQ8N8A8 192 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 TUBG2Q9NRH3 451 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 ZMAT5Q9UDW3 170 aaKnown RBP13.21□□□□□ -0.29
CLN3-251ENST00000636853 DUSP13Q9UII6 198 aa13.21□□□□□ -0.29
CLN3-251ENST00000636853 ZGRF1Q86YA3 2104 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms