RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PLEKHF2Q9H8W4 249 aa16.73■□□□□ 0.27
CLN3-250ENST00000636839 SEBOXQ9HB31 216 aaPredicted RBP16.73■□□□□ 0.27
CLN3-250ENST00000636839 OR1A1Q9P1Q5 309 aa16.73■□□□□ 0.27
CLN3-250ENST00000636839 TNFRSF13BO14836 293 aaPredicted RBP16.72■□□□□ 0.27
CLN3-250ENST00000636839 EDDM3BP56851 147 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 HLA-DRB3P79483 266 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 AVPI1Q5T686 147 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 OR1L1Q8NH94 360 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 TMEM246Q9BRR3 403 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 ZNF665Q9H7R5 613 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 KIR2DS1A0A191URI9 304 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 C12orf77C9JDV5 145 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 AADACP22760 399 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 SSTR5P35346 364 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 KIR2DS4P43632 304 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 RAG2P55895 527 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 FXYD4P59646 89 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 KIR2DS1Q14954 304 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 C5orf66Q9H5L9 145 aa16.72■□□□□ 0.27
CLN3-250ENST00000636839 C7orf66A4D0T2 115 aa16.71■□□□□ 0.27
CLN3-250ENST00000636839 A8MV72 311 aaPredicted RBP16.71■□□□□ 0.27
CLN3-250ENST00000636839 MGST3O14880 152 aa16.71■□□□□ 0.27
CLN3-250ENST00000636839 SIGLEC5O15389 551 aa16.71■□□□□ 0.27
CLN3-250ENST00000636839 TMEM17Q86X19 198 aa16.71■□□□□ 0.27
CLN3-250ENST00000636839 RFESDQ8TAC1 157 aa16.71■□□□□ 0.27
CLN3-250ENST00000636839 CTSZQ9UBR2 303 aa16.71■□□□□ 0.27
CLN3-250ENST00000636839 H7C1Q1 480 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 DAOP14920 347 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 KCNJ3P48549 501 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 MECP2P51608 486 aaKnown RBP16.7■□□□□ 0.26
CLN3-250ENST00000636839 UBE2MP61081 183 aaKnown RBP16.7■□□□□ 0.26
CLN3-250ENST00000636839 GLDNQ6ZMI3 551 aaPredicted RBP16.7■□□□□ 0.26
CLN3-250ENST00000636839 TOMM40LQ969M1 308 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 RTBDNQ9BSG5 229 aaPredicted RBP16.7■□□□□ 0.26
CLN3-250ENST00000636839 PARP12Q9H0J9 701 aaKnown RBP16.7■□□□□ 0.26
CLN3-250ENST00000636839 SLC23A1Q9UHI7 598 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 GPR132Q9UNW8 380 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 ODAMA1E959 279 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 GLP1RP43220 463 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 IL13RA1P78552 427 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 HMGN3Q15651 99 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 LDLRAD3Q86YD5 345 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 OR4A4PQ8NGN8 299 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 CHAC2Q8WUX2 184 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 OR51J1Q9H342 316 aa16.7■□□□□ 0.26
CLN3-250ENST00000636839 CLEC18AA5D8T8 446 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 ADAM20O43506 726 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 AKR1C4P17516 323 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 P2RX3P56373 397 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 CLEC18BQ6UXF7 455 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 CLEC18CQ8NCF0 446 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 NRGNQ92686 78 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 FXYD6Q9H0Q3 95 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 ASH1LQ9NR48 2969 aaKnown RBP16.69■□□□□ 0.26
CLN3-250ENST00000636839 IGKV1D-13A0A0B4J2D9 117 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 IGKV1-13P0DP09 117 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 NDUFB7P17568 137 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 C4orf46Q504U0 113 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 MOB1BQ7L9L4 216 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 PEG10Q86TG7 708 aaKnown RBP16.69■□□□□ 0.26
CLN3-250ENST00000636839 ZDHHC22Q8N966 263 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 PPP1R35Q8TAP8 253 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 TMEM230Q96A57 120 aa16.69■□□□□ 0.26
CLN3-250ENST00000636839 USP9YO00507 2555 aaPredicted RBP16.68■□□□□ 0.26
CLN3-250ENST00000636839 TRBV6-7A0A0A0MS04 114 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 CEACAM18A8MTB9 384 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 PPYP01298 95 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 HBZP02008 142 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 OR4E1P0C645 316 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 PGAM2P15259 253 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 PAX5Q02548 391 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 TLE4Q04727 773 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 TCF23Q7RTU1 214 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 MUC20Q8N307 709 aaPredicted RBP16.68■□□□□ 0.26
CLN3-250ENST00000636839 OR52L2PQ8NGH6 319 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 NEU4Q8WWR8 484 aaPredicted RBP16.68■□□□□ 0.26
CLN3-250ENST00000636839 MYOZ1Q9NP98 299 aaPredicted RBP16.68■□□□□ 0.26
CLN3-250ENST00000636839 KCNIP1Q9NZI2 227 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 ZNF69Q9UC07 566 aa16.68■□□□□ 0.26
CLN3-250ENST00000636839 FBN2P35556 2912 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 NKX6-3A6NJ46 265 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 J3QKU1 62 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 FPR2P25090 351 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 PPP1R1AQ13522 171 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 GNMTQ14749 295 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 FCN2Q15485 313 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 LTC4SQ16873 150 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 UTF1Q5T230 341 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 SLC25A42Q86VD7 318 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 OR5D13Q8NGL4 314 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 OR10J5Q8NHC4 309 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 ARL11Q969Q4 196 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 CABLES2Q9BTV7 478 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 SLC25A10Q9UBX3 287 aaPredicted RBP16.67■□□□□ 0.26
CLN3-250ENST00000636839 C15orf65H3BRN8 121 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 IGHV2-70P01814 119 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 OMGP23515 440 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 ZNF295-AS1Q8N0V1 137 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 MOB3AQ96BX8 217 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 DLL4Q9NR61 685 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms