RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 TMEM178BH3BS89 294 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 BOLA2-SMG1P6H3BVE0 249 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 K7N7A8 449 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 SDCBPO00560 298 aaPredicted RBP8.85□□□□□ -0.99
CLN3-248ENST00000636355 SIGLEC5O15389 551 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 RGS11O94810 467 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 C1QBP02746 253 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 HPXP02790 462 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 GSTT2P0CG29 244 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 ZNF728P0DKX0 622 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 PGAM2P15259 253 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 S100GP29377 79 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 FCGR2CP31995 323 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 GABRA2P47869 451 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 NPY4RP50391 375 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 P2RX3P56373 397 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 RAP2BP61225 183 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 SRPXP78539 464 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 IL13RA1P78552 427 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 CCL8P80075 99 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 HERPUD1Q15011 391 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 FCN2Q15485 313 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 IGFBP7Q16270 282 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 CARTPTQ16568 116 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 ZFP69Q49AA0 526 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 KRBOX4Q5JUW0 171 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 H1FOOQ8IZA3 346 aaPredicted RBP8.85□□□□□ -0.99
CLN3-248ENST00000636355 MUC20Q8N307 709 aaPredicted RBP8.85□□□□□ -0.99
CLN3-248ENST00000636355 C12orf45Q8N5I9 185 aaPredicted RBP8.85□□□□□ -0.99
CLN3-248ENST00000636355 OR2AK2Q8NG84 335 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 OR11H7Q8NGC8 314 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 OR10J5Q8NHC4 309 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 GALNT14Q96FL9 552 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 COQ2Q96H96 371 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 ZNF665Q9H7R5 613 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 DLL4Q9NR61 685 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 TMEM106BQ9NUM4 274 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 OR6C3Q9NZP0 311 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 MYO18BQ8IUG5 2567 aa8.85□□□□□ -0.99
CLN3-248ENST00000636355 IGHV1-69-2A0A0G2JMI3 117 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 ODAMA1E959 279 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 FAM172BPA6NC97 362 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 CRYM-AS1A6NIL9 109 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 SPINT2O43291 252 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 OR2A4O95047 310 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 SFT2D2O95562 160 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 GZMHP20718 246 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 CD80P33681 288 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 HTD2P86397 168 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 CD83Q01151 205 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 PPP1R1AQ13522 171 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 ABCA11PQ4W5N1 156 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 IGSF11Q5DX21 431 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 C11orf71Q6IPW1 123 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 C20orf204Q6ZNR8 217 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 ZNF788Q6ZQV5 615 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 COQ8AQ8NI60 647 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 CAPSLQ8WWF8 208 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 TMEM230Q96A57 120 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 GALMQ96C23 342 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 C14orf79Q96F83 325 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 CYYR1Q96J86 154 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 OR2A7Q96R45 310 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 RSRP1Q9BUV0 290 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 SUCNR1Q9BXA5 334 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 ZNF436Q9C0F3 470 aaPredicted RBP8.84□□□□□ -0.99
CLN3-248ENST00000636355 SHARPINQ9H0F6 387 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 RAB1BQ9H0U4 201 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 TAF9BQ9HBM6 251 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 RANGRFQ9HD47 186 aaPredicted RBP8.84□□□□□ -0.99
CLN3-248ENST00000636355 KAAG1Q9UBP8 84 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 KIF25Q9UIL4 384 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 OR2W1Q9Y3N9 320 aa8.84□□□□□ -0.99
CLN3-248ENST00000636355 ZNF462Q96JM2 2506 aa8.83□□□□□ -1
CLN3-248ENST00000636355 PPIAL4EA0A075B759 164 aa8.83□□□□□ -1
CLN3-248ENST00000636355 DBX1A6NMT0 343 aa8.83□□□□□ -1
CLN3-248ENST00000636355 PPIAL4DF5H284 164 aa8.83□□□□□ -1
CLN3-248ENST00000636355 SLC22A5O76082 557 aa8.83□□□□□ -1
CLN3-248ENST00000636355 PLAUP00749 431 aa8.83□□□□□ -1
CLN3-248ENST00000636355 IFNA2P01563 188 aa8.83□□□□□ -1
CLN3-248ENST00000636355 SCTP09683 121 aa8.83□□□□□ -1
CLN3-248ENST00000636355 PPIAL4FP0DN26 164 aa8.83□□□□□ -1
CLN3-248ENST00000636355 RPS2P15880 293 aaKnown RBP8.83□□□□□ -1
CLN3-248ENST00000636355 RCC1P18754 421 aaPredicted RBP8.83□□□□□ -1
CLN3-248ENST00000636355 AADACP22760 399 aa8.83□□□□□ -1
CLN3-248ENST00000636355 VAMP1P23763 118 aa8.83□□□□□ -1
CLN3-248ENST00000636355 CD34P28906 385 aa8.83□□□□□ -1
CLN3-248ENST00000636355 CEBPDP49716 269 aaPredicted RBP8.83□□□□□ -1
CLN3-248ENST00000636355 EIF2B2P49770 351 aaKnown RBP8.83□□□□□ -1
CLN3-248ENST00000636355 GMFBP60983 142 aa8.83□□□□□ -1
CLN3-248ENST00000636355 SRSF4Q08170 494 aaKnown RBP8.83□□□□□ -1
CLN3-248ENST00000636355 HFEQ30201 348 aa8.83□□□□□ -1
CLN3-248ENST00000636355 SPRNQ5BIV9 151 aa8.83□□□□□ -1
CLN3-248ENST00000636355 LIN54Q6MZP7 749 aa8.83□□□□□ -1
CLN3-248ENST00000636355 KCTD9Q7L273 389 aa8.83□□□□□ -1
CLN3-248ENST00000636355 SGPP2Q8IWX5 399 aa8.83□□□□□ -1
CLN3-248ENST00000636355 CMTM1Q8IZ96 169 aa8.83□□□□□ -1
CLN3-248ENST00000636355 OR5T2Q8NGG2 359 aa8.83□□□□□ -1
CLN3-248ENST00000636355 OR5M8Q8NGP6 311 aa8.83□□□□□ -1
CLN3-248ENST00000636355 NEU4Q8WWR8 484 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms