RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ACOT6Q3I5F7 207 aaPredicted RBP9.57□□□□□ -0.88
CLN3-244ENST00000636147 FFAR4Q5NUL3 377 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 OR10P1Q8NGE3 313 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 Q96M66 194 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 RAB40CQ96S21 281 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 HIST1H2BLQ99880 126 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 TMEM222Q9H0R3 208 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 PLA2G3Q9NZ20 509 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 MTCH2Q9Y6C9 303 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 COL4A3Q01955 1670 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 KIAA1671Q9BY89 1806 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 TRAF3IP2O43734 574 aaPredicted RBP9.57□□□□□ -0.88
CLN3-244ENST00000636147 PAGE4O60829 102 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 IGHV4-34P06331 123 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 DPPA3Q6W0C5 159 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 VAMP8Q9BV40 100 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 RBKSQ9H477 322 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 NOSIPQ9Y314 301 aaKnown RBP9.57□□□□□ -0.88
CLN3-244ENST00000636147 NPIPB7O75200 414 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 CTXN2P0C2S0 81 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 PSG2P11465 335 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 COX5AP20674 150 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 APLNRP35414 380 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 EDDM3BP56851 147 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 QRFPP83859 136 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 COL10A1Q03692 680 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 VWCEQ96DN2 955 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 TMEM204Q9BSN7 226 aa9.57□□□□□ -0.88
CLN3-244ENST00000636147 HEYLQ9NQ87 328 aaPredicted RBP9.57□□□□□ -0.88
CLN3-244ENST00000636147 ABCA1O95477 2261 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 SYNGR4O95473 234 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 ICAM4Q14773 271 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 MRGPRGQ86SM5 289 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 H1FOOQ8IZA3 346 aaPredicted RBP9.56□□□□□ -0.88
CLN3-244ENST00000636147 OR10G4Q8NGN3 311 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 OR10G9Q8NGN4 311 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 OR10G7Q8NGN6 311 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 PINX1Q96BK5 328 aaKnown RBP9.56□□□□□ -0.88
CLN3-244ENST00000636147 LYRM2Q9NU23 88 aaPredicted RBP9.56□□□□□ -0.88
CLN3-244ENST00000636147 GOLT1BQ9Y3E0 138 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 TRIOBPQ9H2D6 2365 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 IGHV1OR21-1A0A087WYE8 117 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 LMO7DNF2Z398 122 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 IFI6P09912 130 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 GALNSP34059 522 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 C9orf50Q5SZB4 431 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 SPATA46Q5T0L3 261 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 SYT13Q7L8C5 426 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 ANKRD37Q7Z713 158 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 FOXB1Q99853 325 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 ENY2Q9NPA8 101 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 NXPH2O95156 264 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 PMCHP20382 165 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 CD27P26842 260 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 NPBWR2P48146 333 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 SSR4P51571 173 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 LSM6P62312 80 aaKnown RBP9.56□□□□□ -0.88
CLN3-244ENST00000636147 FOXO1Q12778 655 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 SLC25A47Q6Q0C1 308 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 RPS19BP1Q86WX3 136 aaKnown RBP9.56□□□□□ -0.88
CLN3-244ENST00000636147 DMBX1Q8NFW5 382 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 OR4X1Q8NH49 305 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 VN1R17PQ8TDU5 208 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 GTF3AQ92664 365 aaKnown RBP9.56□□□□□ -0.88
CLN3-244ENST00000636147 CLDN23Q96B33 292 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 MOB3AQ96BX8 217 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 ZNF488Q96MN9 340 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 NOL4LQ96MY1 436 aaPredicted RBP9.56□□□□□ -0.88
CLN3-244ENST00000636147 NUDT16L1Q9BRJ7 211 aaKnown RBP9.56□□□□□ -0.88
CLN3-244ENST00000636147 COL4A4P53420 1690 aaPredicted RBP9.56□□□□□ -0.88
CLN3-244ENST00000636147 COL4A6Q14031 1691 aa9.56□□□□□ -0.88
CLN3-244ENST00000636147 PLXNA2O75051 1894 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 F6UZH7 168 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 GRPP07492 148 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 SLC25A6P12236 298 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 PLPPR5Q32ZL2 321 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 SIGLECL1Q8N7X8 197 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 PLA2G2EQ9NZK7 142 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 TP53TG5Q9Y2B4 290 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 NCOR1O75376 2440 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 ZNF814B7Z6K7 855 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 AQP7O14520 342 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 ZNF506Q5JVG8 444 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 OIT3Q8WWZ8 545 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 BCL3P20749 454 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 PCP4P48539 62 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 CCR5P51681 352 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 CD81P60033 236 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 RAB35Q15286 201 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 ZNF818PQ6ZRF7 136 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 TMEM183AQ8IXX5 376 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 RASL10BQ96S79 203 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 CTDSP1Q9GZU7 261 aa9.55□□□□□ -0.88
CLN3-244ENST00000636147 LRRC3CA6NJW4 275 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 KIAA1324LA8MWY0 1029 aaPredicted RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 C17orf112F2Z3M2 114 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 TCF21O43680 179 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 MGST1P10620 155 aaKnown RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 MEF2BQ02080 365 aaPredicted RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 H2BFWTQ7Z2G1 175 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms