RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 FAAP24Q9BTP7 215 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 MRPL13Q9BYD1 178 aaKnown RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 MAP1LC3BQ9GZQ8 125 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 WNT5BQ9H1J7 359 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 OR6C3Q9NZP0 311 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 CFAP54Q96N23 3096 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 KIR2DS5A0A0G2JLQ3 304 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 A0A0G2JNG1 304 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 A0A0U1RQV5 110 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM150CB9EJG8 249 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 KIR2DS3K7RE56 304 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 IGHG1P01857 330 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 IGKV3-11P04433 115 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 EDN3P14138 238 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 BRS3P32247 399 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 OPRM1P35372 400 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 KIR2DS5Q14953 304 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 DDIT4LQ96D03 193 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 MS4A10Q96PG2 267 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 ALKBH4Q9NXW9 302 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 RALGAPA1Q6GYQ0 2036 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 A0A1W2PPQ1 181 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 C17orf51A8MQB3 221 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM250H0YL14 139 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 IGLV3-1P01715 115 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 CD55P08174 381 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 CTSSP25774 331 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 CD82P27701 267 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 NPBWR2P48146 333 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 GNG10P50151 68 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 RRADP55042 308 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 PPP1CAP62136 330 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 SERF2P84101 59 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF154Q13106 437 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 COL5A1-AS1Q5SY13 56 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 DMRTA1Q5VZB9 504 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 C17orf78Q8N4C9 275 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 OR11L1Q8NGX0 322 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 NEK7Q8TDX7 302 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 ZCCHC14Q8WYQ9 949 aaKnown RBP9.34□□□□□ -0.91
UPF3A-212ENST00000619079 PINX1Q96BK5 328 aaKnown RBP9.34□□□□□ -0.91
UPF3A-212ENST00000619079 PCGF1Q9BSM1 259 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 RPRMQ9NS64 109 aa9.34□□□□□ -0.91
UPF3A-212ENST00000619079 A6NNC1 897 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF705FA8MVS1 300 aaPredicted RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 B4DGG1 531 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 H0YIG0 161 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 CDX4O14627 284 aaPredicted RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 TNFSF13O75888 250 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF705DP0CH99 300 aaPredicted RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF705BP0CI00 300 aaPredicted RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 GZMHP20718 246 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 VDAC1P21796 283 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 UBE2NP61088 152 aaKnown RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 MRPS34P82930 218 aaKnown RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 SHBQ15464 509 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 EXT1Q16394 746 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 TMEM183BQ1AE95 376 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 CXorf66Q5JRM2 361 aaPredicted RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 LCN15Q6UWW0 184 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 WDFY1Q8IWB7 410 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 NECAP1Q8NC96 275 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 SAP25Q8TEE9 199 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 FAM122AQ96E09 287 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 MAGT1Q9H0U3 335 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 PNRC2Q9NPJ4 139 aaKnown RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 SERINC1Q9NRX5 453 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 ZFP30Q9Y2G7 519 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 CABIN1Q9Y6J0 2220 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 ADAM20O43506 726 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 DDAH2O95865 285 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 HLA-HP01893 362 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 IL6RP08887 468 aaPredicted RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 IRF2P14316 349 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 TNFSF10P50591 281 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 MEF2BQ02080 365 aaPredicted RBP9.33□□□□□ -0.92
UPF3A-212ENST00000619079 ODF3L1Q8IXM7 274 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 SLC25A45Q8N413 288 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF721Q8TF20 911 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 PATE1Q8WXA2 126 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 SPSB1Q96BD6 273 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 TBX15Q96SF7 602 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 EMC6Q9BV81 110 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 GAL3ST2Q9H3Q3 398 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 PLK3Q9H4B4 646 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 PLSCR2Q9NRY7 297 aa9.33□□□□□ -0.92
UPF3A-212ENST00000619079 FAM186AA6NE01 2351 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 ADAMTS9Q9P2N4 1935 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 LMO7DNF2Z398 122 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 RER1O15258 196 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 PPYP01298 95 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 LCATP04180 440 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 UMODP07911 640 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 RPL23P62829 140 aaKnown RBP9.32□□□□□ -0.92
UPF3A-212ENST00000619079 GNB2P62879 340 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 ZNF92Q03936 586 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 UEVLDQ8IX04 471 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 SELENOHQ8IZQ5 122 aaKnown RBP9.32□□□□□ -0.92
UPF3A-212ENST00000619079 IL22RA2Q969J5 263 aa9.32□□□□□ -0.92
UPF3A-212ENST00000619079 MRGPRX4Q96LA9 322 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms