RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 HTR3BO95264 441 aa19.58■□□□□ 0.72
PTPRF-216ENST00000617451 RPLP1P05386 114 aaKnown RBP19.58■□□□□ 0.72
PTPRF-216ENST00000617451 ALDH3A2P51648 485 aa19.58■□□□□ 0.72
PTPRF-216ENST00000617451 GBX2P52951 348 aaPredicted RBP19.58■□□□□ 0.72
PTPRF-216ENST00000617451 PNLIPRP3Q17RR3 467 aa19.58■□□□□ 0.72
PTPRF-216ENST00000617451 NHLRC3Q5JS37 347 aa19.58■□□□□ 0.72
PTPRF-216ENST00000617451 Q8N9W7 124 aa19.58■□□□□ 0.72
PTPRF-216ENST00000617451 RGP1Q92546 391 aaPredicted RBP19.58■□□□□ 0.72
PTPRF-216ENST00000617451 JAM3Q9BX67 310 aa19.58■□□□□ 0.72
PTPRF-216ENST00000617451 LIN7CQ9NUP9 197 aaKnown RBP19.58■□□□□ 0.72
PTPRF-216ENST00000617451 TAS2R4Q9NYW5 299 aa19.58■□□□□ 0.72
PTPRF-216ENST00000617451 C15orf65H3BRN8 121 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 CIB2O75838 187 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 CDRT1O95170 752 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 NHLRC4P0CG21 123 aaPredicted RBP19.57■□□□□ 0.72
PTPRF-216ENST00000617451 SOX2P48431 317 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 RAB25P57735 213 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 LINC00311Q8N616 119 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 OR52M1Q8NGK5 317 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 OR2T10Q8NGZ9 312 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 GON7Q9BXV9 100 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 AMBNQ9NP70 447 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 FAM53CQ9NYF3 392 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 GMPPBQ9Y5P6 360 aa19.57■□□□□ 0.72
PTPRF-216ENST00000617451 TMEM30CPA0ZSE6 113 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 MPZL2O60487 215 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 OR7C1O76099 320 aaPredicted RBP19.56■□□□□ 0.72
PTPRF-216ENST00000617451 RAB40BQ12829 278 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 RNF152Q8N8N0 203 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 C8orf31Q8N9H6 132 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 TMEM104Q8NE00 496 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 RHOXF1Q8NHV9 184 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 ARL11Q969Q4 196 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 ST6GALNAC6Q969X2 333 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 Q96MT0 163 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 PLSCR3Q9NRY6 295 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 IL36GQ9NZH8 169 aa19.56■□□□□ 0.72
PTPRF-216ENST00000617451 LSM4Q9Y4Z0 139 aaKnown RBP19.56■□□□□ 0.72
PTPRF-216ENST00000617451 STAB2Q8WWQ8 2551 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 CDX1P47902 265 aaPredicted RBP19.55■□□□□ 0.72
PTPRF-216ENST00000617451 GTF2A1P52655 376 aaPredicted RBP19.55■□□□□ 0.72
PTPRF-216ENST00000617451 RBM11P57052 281 aaKnown RBP19.55■□□□□ 0.72
PTPRF-216ENST00000617451 FOXE3Q13461 319 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 GPR50Q13585 617 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 KIR2DS1Q14954 304 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 DEFB136Q30KP8 78 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 CXorf66Q5JRM2 361 aaPredicted RBP19.55■□□□□ 0.72
PTPRF-216ENST00000617451 LCNL1Q6ZST4 164 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 OR52I1Q8NGK6 324 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 OR8U1Q8NH10 309 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 OR52N1Q8NH53 320 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 METTL9Q9H1A3 318 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 GFOD1Q9NXC2 390 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 ING4Q9UNL4 249 aa19.55■□□□□ 0.72
PTPRF-216ENST00000617451 SDCBPO00560 298 aaPredicted RBP19.54■□□□□ 0.72
PTPRF-216ENST00000617451 GEMIN2O14893 280 aaKnown RBP19.54■□□□□ 0.72
PTPRF-216ENST00000617451 CD1BP29016 333 aa19.54■□□□□ 0.72
PTPRF-216ENST00000617451 LUMP51884 338 aaPredicted RBP19.54■□□□□ 0.72
PTPRF-216ENST00000617451 KLHL22Q53GT1 634 aa19.54■□□□□ 0.72
PTPRF-216ENST00000617451 CBR4Q8N4T8 237 aa19.54■□□□□ 0.72
PTPRF-216ENST00000617451 GPR148Q8TDV2 347 aa19.54■□□□□ 0.72
PTPRF-216ENST00000617451 RTN4IP1Q8WWV3 396 aaPredicted RBP19.54■□□□□ 0.72
PTPRF-216ENST00000617451 MRPS18AQ9NVS2 196 aaKnown RBP19.54■□□□□ 0.72
PTPRF-216ENST00000617451 H3BNX3 289 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 ORC5O43913 435 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 CD2P06729 351 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 ELANEP08246 267 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 FAM53AQ6NSI3 398 aaPredicted RBP19.53■□□□□ 0.72
PTPRF-216ENST00000617451 LINC00596Q86U02 117 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 OR5M8Q8NGP6 311 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 UBALD1Q8TB05 177 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 S1PR3Q99500 378 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 TMEM138Q9NPI0 162 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 U3KQK5 164 aa19.53■□□□□ 0.72
PTPRF-216ENST00000617451 MOSP00540 346 aa19.52■□□□□ 0.72
PTPRF-216ENST00000617451 CSTBP04080 98 aaKnown RBP19.52■□□□□ 0.72
PTPRF-216ENST00000617451 LIMS3P0CW19 117 aa19.52■□□□□ 0.72
PTPRF-216ENST00000617451 LIMS4P0CW20 117 aa19.52■□□□□ 0.72
PTPRF-216ENST00000617451 IL3RAP26951 378 aa19.52■□□□□ 0.72
PTPRF-216ENST00000617451 CFHR3Q02985 330 aa19.52■□□□□ 0.72
PTPRF-216ENST00000617451 C9orf66Q5T8R8 295 aa19.52■□□□□ 0.72
PTPRF-216ENST00000617451 CCDC107Q8WV48 283 aa19.52■□□□□ 0.72
PTPRF-216ENST00000617451 TMEM106AQ96A25 262 aa19.52■□□□□ 0.72
PTPRF-216ENST00000617451 RASL11BQ9BPW5 248 aa19.52■□□□□ 0.72
PTPRF-216ENST00000617451 IGHV3-43A0A0B4J1X8 118 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 ZNF736B4DX44 427 aaPredicted RBP19.51■□□□□ 0.71
PTPRF-216ENST00000617451 RRP9O43818 475 aaKnown RBP19.51■□□□□ 0.71
PTPRF-216ENST00000617451 MT-ND4P03905 459 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 IGHV3-43DP0DP04 118 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 ZNF93P35789 620 aaPredicted RBP19.51■□□□□ 0.71
PTPRF-216ENST00000617451 MPV17LQ2QL34 196 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 Q3ZCU0 254 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 CCDC58Q4VC31 144 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 DDI2Q5TDH0 399 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 XAF1Q6GPH4 301 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 RPL22L1Q6P5R6 122 aaKnown RBP19.51■□□□□ 0.71
PTPRF-216ENST00000617451 ZNF497Q6ZNH5 498 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 OR8H1Q8NGG4 311 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 PRR25Q96S07 402 aa19.51■□□□□ 0.71
PTPRF-216ENST00000617451 PAK1IP1Q9NWT1 392 aaPredicted RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms