RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ZNF503-AS2A6NEH8 195 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 SLC22A20A6NK97 555 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 HS3ST1O14792 307 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 TAAR5O14804 337 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 TNFSF12O43508 249 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 LOXL4Q96JB6 756 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 HS3ST6Q96QI5 342 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 WNT5BQ9H1J7 359 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 STARD10Q9Y365 291 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 ZNF705GA8MUZ8 300 aaPredicted RBP12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H1BP16401 226 aaKnown RBP12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 TAS2R60P59551 318 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 RHEBQ15382 184 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 PEG10Q86TG7 708 aaKnown RBP12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 CXorf67Q86X51 503 aaPredicted RBP12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 TMEM54Q969K7 222 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 ABHD14AQ9BUJ0 271 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 DNAJB11Q9UBS4 358 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 FOXD3Q9UJU5 478 aaPredicted RBP12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 ETV2O00321 342 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 SOX15O60248 233 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H2BKO60814 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H2BJP06899 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 OMGP23515 440 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H2BOP23527 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H2BBP33778 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H2BDP58876 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H2BCP62807 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 MRPS34P82930 218 aaKnown RBP12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 QRFPP83859 136 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST2H2BEQ16778 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 RNFT1Q5M7Z0 435 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 AKR1C8PQ5T2L2 129 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 MEX3BQ6ZN04 569 aaKnown RBP12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 ZADH2Q8N4Q0 377 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H2BHQ93079 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H2BNQ99877 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H2BMQ99879 126 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 PECRQ9BY49 303 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 TUBA4BQ9H853 241 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 C14orf166Q9Y224 244 aaKnown RBP12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 CCL20P78556 96 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 ALKBH6Q3KRA9 238 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 RNF138Q8WVD3 245 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 RAB39BQ96DA2 213 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 C1orf147Q96MC9 270 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 WFDC1Q9HC57 220 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 NPIPB13A6NJU9 1138 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 C21orf140B9A014 251 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 NPIPB4C9JG80 1138 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 CYTIPO60759 359 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 PTGER4P35408 488 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 ZFP62Q8NB50 900 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 RDH5Q92781 318 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 CPNE4Q96A23 557 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 PBDC1Q9BVG4 233 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 OR14J1Q9UGF5 321 aa12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 ZNF107Q9UII5 783 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-208ENST00000617339 SP1P08047 785 aa12.46□□□□□ -0.41
SHROOM1-208ENST00000617339 CHRM2P08172 466 aa12.46□□□□□ -0.41
SHROOM1-208ENST00000617339 NHLH2Q02577 135 aa12.46□□□□□ -0.41
SHROOM1-208ENST00000617339 CLN3Q13286 438 aa12.46□□□□□ -0.41
SHROOM1-208ENST00000617339 MYPOPQ86VE0 399 aaPredicted RBP12.46□□□□□ -0.41
SHROOM1-208ENST00000617339 METTL9Q9H1A3 318 aa12.46□□□□□ -0.41
SHROOM1-208ENST00000617339 MOB1AQ9H8S9 216 aa12.46□□□□□ -0.41
SHROOM1-208ENST00000617339 POMT1Q9Y6A1 747 aa12.46□□□□□ -0.41
SHROOM1-208ENST00000617339 COL12A1Q99715 3063 aa12.46□□□□□ -0.41
SHROOM1-208ENST00000617339 BORCS7-ASMTA0A0B4J1R7 106 aa12.46□□□□□ -0.42
SHROOM1-208ENST00000617339 H3BQ15 152 aa12.46□□□□□ -0.42
SHROOM1-208ENST00000617339 HSPA12AO43301 675 aa12.46□□□□□ -0.42
SHROOM1-208ENST00000617339 GGNBP1Q5YKI7 109 aa12.46□□□□□ -0.42
SHROOM1-208ENST00000617339 OR5L1Q8NGL2 311 aa12.46□□□□□ -0.42
SHROOM1-208ENST00000617339 KCNE4Q8WWG9 221 aa12.46□□□□□ -0.42
SHROOM1-208ENST00000617339 IL1F10Q8WWZ1 152 aa12.46□□□□□ -0.42
SHROOM1-208ENST00000617339 LOC390937A0A1W2PQ73 354 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 SYNGR3O43761 229 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 LILRA1O75019 489 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 ONECUT2O95948 504 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 IFNA21P01568 189 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 ERVFRD-1P60508 538 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 BEND4Q6ZU67 534 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 SNX22Q96L94 193 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 ADAMTS20P59510 1910 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 ZNF16P17020 682 aaPredicted RBP12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 FABP6P51161 128 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 RAB35Q15286 201 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 SUMF1Q8NBK3 374 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 HAS2Q92819 552 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 ZNF703Q9H7S9 590 aaPredicted RBP12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 SH2D2AQ9NP31 389 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 AK3Q9UIJ7 227 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 NOTCH2Q04721 2471 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 IGKV1-12A0A0C4DH73 117 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 SCAF4O95104 1147 aaKnown RBP12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 IGKV1D-12P01611 117 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 GRPP07492 148 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 FPR2P25090 351 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 TGFBR3Q03167 851 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 OR8G1Q15617 311 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms