RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MRPS24Q96EL2 167 aaKnown RBP10.93□□□□□ -0.66
LINC00540-202ENST00000616974 UBE2J1Q9Y385 318 aaPredicted RBP10.93□□□□□ -0.66
LINC00540-202ENST00000616974 UBBP0CG47 229 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 CD24P25063 80 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 UBA52P62987 128 aaKnown RBP10.93□□□□□ -0.66
LINC00540-202ENST00000616974 BLMHQ13867 455 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 SLC35E4Q6ICL7 350 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 Q6YL49 198 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 LINC00596Q86U02 117 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 OR4P4Q8NGL7 312 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 ZNF418Q8TF45 676 aaPredicted RBP10.93□□□□□ -0.66
LINC00540-202ENST00000616974 DMRTB1Q96MA1 342 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 TMEM133Q9H2Q1 129 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 GHRLQ9UBU3 117 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 AK3Q9UIJ7 227 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 HILPDAQ9Y5L2 63 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 SESN1Q9Y6P5 492 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 NOTOA8MTQ0 251 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 MCRIP1C9JLW8 97 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 SLC31A2O15432 143 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 GNG10P50151 68 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 PAX5Q02548 391 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 GNMTQ14749 295 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 GPR107Q5VW38 600 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 ZNF626Q68DY1 528 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 GAPTQ8N292 157 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 MAFIPQ8WZ33 124 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 C19orf24Q9BVV8 132 aa10.92□□□□□ -0.66
LINC00540-202ENST00000616974 TMEM30CPA0ZSE6 113 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 RNF212BA8MTL3 300 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 NPIPB11E5RHQ5 1161 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 RAB27BO00194 218 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 PDCD5O14737 125 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 IL1AP01583 271 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 PTHLHP12272 177 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 GNB3P16520 340 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 CFPP27918 469 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 ALDH3B2P48448 385 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 RELBQ01201 579 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 SSX2Q16385 188 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 CTF1Q16619 201 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 IDNKQ5T6J7 187 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 USP43Q70EL4 1123 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 ABHD12Q8N2K0 398 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 OR10V1Q8NGI7 309 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 PIFOQ8TCI5 191 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 ARL11Q969Q4 196 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 SLC25A38Q96DW6 304 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 PARP12Q9H0J9 701 aaKnown RBP10.91□□□□□ -0.66
LINC00540-202ENST00000616974 PRDM13Q9H4Q3 707 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A8PA6NJQ4 464 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 IER3P46695 156 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 ZNF134P52741 427 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 LOXL3P58215 753 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 RBM39Q14498 530 aaKnown RBP10.91□□□□□ -0.66
LINC00540-202ENST00000616974 NCR3LG1Q68D85 454 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 OR2W3Q7Z3T1 314 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 OR11H6Q8NGC7 330 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 NDNFQ8TB73 568 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 ZDHHC16Q969W1 377 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 PECRQ9BY49 303 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 PLEKHJ1Q9NW61 149 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 TAS2R3Q9NYW6 316 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 OR6C3Q9NZP0 311 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 TRAPPC2LQ9UL33 140 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 PSG11Q9UQ72 335 aa10.91□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A10PA6NDY2 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A18PA6NE21 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A16PA6NEW6 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A20PA6NIJ5 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A7PA6NKC0 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 ZNF729A6NN14 1252 aaPredicted RBP10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A22PA8MWA6 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A12PA8MX19 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A5PA8MXJ8 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A23PA8MXZ1 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 IGLV1-47P01700 117 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A15PP0C7V4 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A13PP0C7W8 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A14PP0C7W9 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 FAM90A24PP0C7X0 464 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 MADCAM1Q13477 382 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 LY6EQ16553 131 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 IZUMO1Q8IYV9 350 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 ZNF565Q8N9K5 539 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 NEDD4LQ96PU5 975 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 MRPS26Q9BYN8 205 aaKnown RBP10.9□□□□□ -0.66
LINC00540-202ENST00000616974 GAL3ST2Q9H3Q3 398 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 HEXA-AS1Q9H8Q6 139 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 VCX3AQ9NNX9 186 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 PCDHB16Q9NRJ7 776 aa10.9□□□□□ -0.66
LINC00540-202ENST00000616974 ZNF230Q9UIE0 474 aaPredicted RBP10.9□□□□□ -0.66
LINC00540-202ENST00000616974 A0A1W2PPH5 198 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 FAM181BA6NEQ2 426 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 NAPSAO96009 420 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 HBZP02008 142 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 CD3GP09693 182 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 GUCA2AQ02747 115 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 OR52L2PQ8NGH6 319 aa10.9□□□□□ -0.67
LINC00540-202ENST00000616974 LINC00574Q9H8X3 128 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms