RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PPP1R35Q8TAP8 253 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 NEURL2Q9BR09 285 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 FAM234AQ9H0X4 552 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 ALX4Q9H161 411 aaPredicted RBP11.86□□□□□ -0.51
USP39-220ENST00000613444 MGAT4AQ9UM21 535 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 GPR132Q9UNW8 380 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 OVOL3O00110 214 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 RLN1P04808 185 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 IL5P05113 134 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 FCGR2CP31995 323 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 CDKN1AP38936 164 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 EDDM3AQ14507 147 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 CR1LQ2VPA4 569 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 GLDNQ6ZMI3 551 aaPredicted RBP11.86□□□□□ -0.51
USP39-220ENST00000613444 FGFRL1Q8N441 504 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 OR13A1Q8NGR1 328 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 KIRREL1Q96J84 757 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 TMEM246Q9BRR3 403 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 DCTN5Q9BTE1 182 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 CLEC4MQ9H2X3 399 aaPredicted RBP11.86□□□□□ -0.51
USP39-220ENST00000613444 C5orf66Q9H5L9 145 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 TAF9BQ9HBM6 251 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 MYOZ1Q9NP98 299 aaPredicted RBP11.86□□□□□ -0.51
USP39-220ENST00000613444 DLL4Q9NR61 685 aa11.86□□□□□ -0.51
USP39-220ENST00000613444 TRBV6-7A0A0A0MS04 114 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 ODAMA1E959 279 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 A1L4Q6 167 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 C12orf77C9JDV5 145 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 TMPRSS2O15393 492 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 PRAF2O60831 178 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 TUSC2O75896 110 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 NFYAP23511 347 aaPredicted RBP11.85□□□□□ -0.51
USP39-220ENST00000613444 ERP29P30040 261 aaKnown RBP11.85□□□□□ -0.51
USP39-220ENST00000613444 P2RX3P56373 397 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 SEC61A1P61619 476 aaKnown RBP11.85□□□□□ -0.51
USP39-220ENST00000613444 IL13RA1P78552 427 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 LYPD2Q6UXB3 125 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 OR5D13Q8NGL4 314 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 CAPSLQ8WWF8 208 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 MED30Q96HR3 178 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 NCOR1P1Q9H4R4 102 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 KAAG1Q9UBP8 84 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 PCDHB10Q9UN67 800 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 HELZ2Q9BYK8 2649 aaKnown RBP11.85□□□□□ -0.51
USP39-220ENST00000613444 NPIPB11E5RHQ5 1161 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 BET1O15155 118 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 IGHV2-70P01814 119 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 CTXN2P0C2S0 81 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 FPR2P25090 351 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 SP5Q6BEB4 398 aaPredicted RBP11.85□□□□□ -0.51
USP39-220ENST00000613444 TMEM185AQ8NFB2 350 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 MRGPRDQ8TDS7 321 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 SEC22CQ9BRL7 303 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 RTBDNQ9BSG5 229 aaPredicted RBP11.85□□□□□ -0.51
USP39-220ENST00000613444 FXYD6Q9H0Q3 95 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 CTSZQ9UBR2 303 aa11.85□□□□□ -0.51
USP39-220ENST00000613444 C15orf65H3BRN8 121 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 NDUFS7O75251 213 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 DAOP14920 347 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 AADACP22760 399 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 BAMBIQ13145 260 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 SURF2Q15527 256 aaPredicted RBP11.84□□□□□ -0.51
USP39-220ENST00000613444 TMED4Q7Z7H5 227 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 SLC25A42Q86VD7 318 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 ADAD2Q8NCV1 583 aaKnown RBP11.84□□□□□ -0.51
USP39-220ENST00000613444 UBALD1Q8TB05 177 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 MOB3AQ96BX8 217 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 LURAP1Q96LR2 239 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 FBN2P35556 2912 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 CELSR2Q9HCU4 2923 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 NKX6-3A6NJ46 265 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 DIRAS3O95661 229 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 PPYP01298 95 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 CGB3P0DN86 165 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 CGB7P0DN87 165 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 CD300CQ08708 224 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 METTL11BQ5VVY1 283 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 TCF23Q7RTU1 214 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 ZNF554Q86TJ5 538 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 LDLRAD3Q86YD5 345 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 H1FOOQ8IZA3 346 aaPredicted RBP11.84□□□□□ -0.51
USP39-220ENST00000613444 OR52B4Q8NGK2 314 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 OR1L1Q8NH94 360 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 TMEM230Q96A57 120 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 OR51J1Q9H342 316 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 OR1A1Q9P1Q5 309 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 SLC23A1Q9UHI7 598 aa11.84□□□□□ -0.51
USP39-220ENST00000613444 ASH1LQ9NR48 2969 aaKnown RBP11.83□□□□□ -0.52
USP39-220ENST00000613444 SPG11Q96JI7 2443 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 YLPM1P49750 1951 aaKnown RBP11.83□□□□□ -0.52
USP39-220ENST00000613444 MEX3AA1L020 520 aaKnown RBP11.83□□□□□ -0.52
USP39-220ENST00000613444 HMX3A6NHT5 357 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 J3QKU1 62 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 PFDN1O60925 122 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 HBZP02008 142 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 HEXAP06865 529 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 OR4E1P0C645 316 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 PI3P19957 117 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 SSTR5P35346 364 aa11.83□□□□□ -0.52
USP39-220ENST00000613444 GLP1RP43220 463 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms