RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 CLPXO76031 633 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 GZMHP20718 246 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 SCAND1P57086 179 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 DEFB112Q30KQ8 113 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 PRAMEF5Q5TYX0 476 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 NCR3LG1Q68D85 454 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 FAM53AQ6NSI3 398 aaPredicted RBP11.18□□□□□ -0.62
VRK3-219ENST00000600137 TRAPPC6BQ86SZ2 158 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 CLVS1Q8IUQ0 354 aaPredicted RBP11.18□□□□□ -0.62
VRK3-219ENST00000600137 OR56B1Q8NGI3 324 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 OR10R2Q8NGX6 335 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 RFESDQ8TAC1 157 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 NDNFQ8TB73 568 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 NEK7Q8TDX7 302 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 C17orf50Q8WW18 174 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 KIRREL1Q96J84 757 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 MS4A7Q9GZW8 240 aaPredicted RBP11.18□□□□□ -0.62
VRK3-219ENST00000600137 HEXA-AS1Q9H8Q6 139 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 ESM1Q9NQ30 184 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 PLEKHJ1Q9NW61 149 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 AK3Q9UIJ7 227 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 SPATA2Q9UM82 520 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 CEPT1Q9Y6K0 416 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 SESN1Q9Y6P5 492 aa11.18□□□□□ -0.62
VRK3-219ENST00000600137 TRBV6-6A0A0A6YYG2 114 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 A0A0U1RQK1 487 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 MDFIC2A0A1B0GVS7 189 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 hCG_1809904A0A1W2PP81 198 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 A0A1W2PPE2 198 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 A0A1W2PR64 198 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 A0A1W2PRV1 198 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 C12orf77C9JDV5 145 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 MFNGO00587 321 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 NPFFO15130 113 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 ORC5O43913 435 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 FPR2P25090 351 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 CD34P28906 385 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 SSTR5P35346 364 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 GLP1RP43220 463 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 TMBIM6P55061 237 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 LOXL3P58215 753 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 GUCA2AQ02747 115 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 SPCS2Q15005 226 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 ZNF626Q68DY1 528 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 USP43Q70EL4 1123 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 CROCCP3Q8IVE0 287 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 HDHD3Q9BSH5 251 aaPredicted RBP11.17□□□□□ -0.62
VRK3-219ENST00000600137 TMEM133Q9H2Q1 129 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 GAL3ST2Q9H3Q3 398 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 IDI2-AS1Q9NZ38 188 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 ABRACLQ9P1F3 81 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 SCOCQ9UIL1 159 aa11.17□□□□□ -0.62
VRK3-219ENST00000600137 ELF5Q9UKW6 265 aaPredicted RBP11.17□□□□□ -0.62
VRK3-219ENST00000600137 IGHV2-26A0A0B4J1V2 119 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 F2RL2O00254 374 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 VENTXO95231 258 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 IGLV1-47P01700 117 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 COX7A1P24310 79 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 SAA4P35542 130 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 SRSF2Q01130 221 aaKnown RBP11.16□□□□□ -0.62
VRK3-219ENST00000600137 DYNAPQ8N1N2 210 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 SIGLECL1Q8N7X8 197 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 ZDHHC22Q8N966 263 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 OR10A7Q8NGE5 316 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 UBALD1Q8TB05 177 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 RAB3CQ96E17 227 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 SUCNR1Q9BXA5 334 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 RBM38Q9H0Z9 239 aaKnown RBP11.16□□□□□ -0.62
VRK3-219ENST00000600137 ATG5Q9H1Y0 275 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 ABCG5Q9H222 651 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 DCSTAMPQ9H295 470 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 ZNF286AQ9HBT8 521 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.16□□□□□ -0.62
VRK3-219ENST00000600137 RHBDL2Q9NX52 303 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 ETV7Q9Y603 341 aa11.16□□□□□ -0.62
VRK3-219ENST00000600137 COL6A5A8TX70 2615 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 METTL21EPA6NDL7 271 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 HIST1H1DP16402 221 aaKnown RBP11.15□□□□□ -0.62
VRK3-219ENST00000600137 GNB3P16520 340 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 HILS1P60008 231 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 ZNF260Q3ZCT1 412 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 MIDNQ504T8 468 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 Q6YL49 198 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 LHFPL4Q7Z7J7 247 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 ZNF554Q86TJ5 538 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 ABHD12Q8N2K0 398 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 OR4P4Q8NGL7 312 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 OR13D1Q8NGV5 346 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 OR1L1Q8NH94 360 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 RAB2BQ8WUD1 216 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 ARL11Q969Q4 196 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 KCTD12Q96CX2 325 aaKnown RBP11.15□□□□□ -0.62
VRK3-219ENST00000600137 BCL7BQ9BQE9 202 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 OCEL1Q9H607 264 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 ZMAT3Q9HA38 289 aaKnown RBP11.15□□□□□ -0.62
VRK3-219ENST00000600137 TAF9BQ9HBM6 251 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 TRAPPC2LQ9UL33 140 aa11.15□□□□□ -0.62
VRK3-219ENST00000600137 A0A0A6YYJ9 748 aa11.14□□□□□ -0.63
VRK3-219ENST00000600137 MEIOCA2RUB1 952 aa11.14□□□□□ -0.63
VRK3-219ENST00000600137 FAM172BPA6NC97 362 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms