RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RRP8O43159 456 aaKnown RBP13.15□□□□□ -0.3
UPF1-204ENST00000596842 SYNGR3O43761 229 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 IGKV1-13P0DP09 117 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 DLK1P80370 383 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 MPV17LQ2QL34 196 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 HLA-BQ31612 363 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 OR10D3Q8NH80 312 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 TMEM38BQ9NVV0 291 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 TMED3Q9Y3Q3 217 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 TGIF2-C20orf24A0A0A6YYL0 155 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 TRAV34A0A0B4J273 112 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 DTYMKP23919 212 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 CDX1P47902 265 aaPredicted RBP13.14□□□□□ -0.31
UPF1-204ENST00000596842 MOB3AQ96BX8 217 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 DDA1Q9BW61 102 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 GLRX2Q9NS18 164 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 STRAPQ9Y3F4 350 aaKnown RBP13.14□□□□□ -0.31
UPF1-204ENST00000596842 HS3ST3B1Q9Y662 390 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 WSB1Q9Y6I7 421 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 AGAP20933 346 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 SUCLG1P53597 346 aaKnown RBP13.14□□□□□ -0.31
UPF1-204ENST00000596842 RBM11P57052 281 aaKnown RBP13.14□□□□□ -0.31
UPF1-204ENST00000596842 RAC1P63000 192 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 TNFRSF9Q07011 255 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 KHDC3LQ587J8 217 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 C18orf12Q96KH6 178 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 PATE3B3GLJ2 98 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 SEC14L6B5MCN3 397 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 SIAH2O43255 324 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 CTSSP25774 331 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 APLNRP35414 380 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 PLA2G5P39877 138 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 FUT6P51993 359 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 Q6ZPA2 131 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 SSX7Q7RTT5 188 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 COMMD1Q8N668 190 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 IL22RA1Q8N6P7 574 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 IFI44Q8TCB0 444 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 GALNT14Q96FL9 552 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 RSG1Q9BU20 258 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 PRRG4Q9BZD6 226 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 KCNS2Q9ULS6 477 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 CEP250Q9BV73 2442 aa13.14□□□□□ -0.31
UPF1-204ENST00000596842 ETV2O00321 342 aaPredicted RBP13.13□□□□□ -0.31
UPF1-204ENST00000596842 HIST1H1BP16401 226 aaKnown RBP13.13□□□□□ -0.31
UPF1-204ENST00000596842 LYSMD4Q5XG99 296 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 TMEM37Q8WXS4 190 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 NIPSNAP3BQ9BS92 247 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 EREGO14944 169 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 EPHA8P29322 1005 aaPredicted RBP13.13□□□□□ -0.31
UPF1-204ENST00000596842 OTX1P32242 354 aaPredicted RBP13.13□□□□□ -0.31
UPF1-204ENST00000596842 ELLP55199 621 aaPredicted RBP13.13□□□□□ -0.31
UPF1-204ENST00000596842 MRPL21Q7Z2W9 205 aaKnown RBP13.13□□□□□ -0.31
UPF1-204ENST00000596842 S100A7AQ86SG5 101 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 OR2H1Q9GZK4 316 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 RNF122Q9H9V4 155 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 IGLV3-32A0A0A0MS00 114 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 CBR3O75828 277 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 SERPINE2P07093 398 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 PTTG1IPP53801 180 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 CLDN15P56746 228 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 SPATA46Q5T0L3 261 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 OR1K1Q8NGR3 316 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 WNT5BQ9H1J7 359 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 PLEKHF2Q9H8W4 249 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 CRIM1Q9NZV1 1036 aa13.13□□□□□ -0.31
UPF1-204ENST00000596842 FOXD3Q9UJU5 478 aaPredicted RBP13.13□□□□□ -0.31
UPF1-204ENST00000596842 ZNF816-ZNF321PA0A0X1KG74 233 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 TRDCB7Z8K6 153 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 IGLV3-1P01715 115 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 UMODP07911 640 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 ASPMQ8IZT6 3477 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 IGHV1-45A0A0A0MS14 117 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 ZNF732B4DXR9 585 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 PROB1E7EW31 1015 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 CRYGSP22914 178 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 SLC25A31Q9H0C2 315 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 TMEM222Q9H0R3 208 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 PPP1R3CQ9UQK1 317 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 K7N7A8 449 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 TMEM50AO95807 157 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 CXCL1P09341 107 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 NPSP0C0P6 89 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 FOXG1P55316 489 aaPredicted RBP13.12□□□□□ -0.31
UPF1-204ENST00000596842 HIST1H2AAQ96QV6 131 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 SPIN2AQ99865 258 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 SPIN2BQ9BPZ2 258 aa13.12□□□□□ -0.31
UPF1-204ENST00000596842 MRPL37Q9BZE1 423 aaKnown RBP13.12□□□□□ -0.31
UPF1-204ENST00000596842 MRPL33O75394 65 aaKnown RBP13.11□□□□□ -0.31
UPF1-204ENST00000596842 METTL15P1P0C7V9 234 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 TFPI2P48307 235 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 RAC3P60763 192 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 CPEB3Q8NE35 698 aaKnown RBP13.11□□□□□ -0.31
UPF1-204ENST00000596842 PROK2Q9HC23 129 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 LOC102725191A0A1B0GVB3 256 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 COX6A1P12074 109 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 FOLR2P14207 255 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 SLC10A1Q14973 349 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 ZNF100Q8IYN0 542 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 Q8WTZ3 238 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms