RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SLC16A12Q6ZSM3 486 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 TPRA1Q86W33 373 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 C17orf50Q8WW18 174 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 FAM3DQ96BQ1 224 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 AJUBAQ96IF1 538 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 SSX3Q99909 188 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 CHIAQ9BZP6 476 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 OR51E2Q9H255 320 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 ZNF696Q9H7X3 374 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 RAB9BQ9NP90 201 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 FBLN5Q9UBX5 448 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 TRAPPC2LQ9UL33 140 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 SHISA3A0PJX4 238 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 UBE2QL1A1L167 161 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 IFITM5A6NNB3 132 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 NFYBP25208 207 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 CFPP27918 469 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 HTR1DP28221 377 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 BLVRBP30043 206 aaPredicted RBP12.19□□□□□ -0.46
UPF1-202ENST00000594243 CLDN12P56749 244 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 OR10A3P58181 314 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 FOXL1Q12952 345 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 FAM189A2Q15884 450 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 LRRC75BQ2VPJ9 315 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 TIMM50Q3ZCQ8 353 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 NKAPLQ5M9Q1 402 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 TRAT1Q6PIZ9 186 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 GDPGP1Q6ZNW5 385 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 LHFPL4Q7Z7J7 247 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 GAPTQ8N292 157 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 FAM89BQ8N5H3 189 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 CCDC107Q8WV48 283 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 ARL11Q969Q4 196 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 CREB3L1Q96BA8 519 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 KIRREL1Q96J84 757 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 KCTD7Q96MP8 289 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 LPAR5Q9H1C0 372 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 KCNK15Q9H427 330 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 PLEKHJ1Q9NW61 149 aa12.19□□□□□ -0.46
UPF1-202ENST00000594243 TRAV39A0A0B4J263 110 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 FAM181BA6NEQ2 426 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 CHATP28329 748 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 GDNFP39905 211 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 COMPP49747 757 aaPredicted RBP12.18□□□□□ -0.46
UPF1-202ENST00000594243 SSX2Q16385 188 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 C6orf183Q5T699 404 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 BAIAP2L2Q6UXY1 529 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 C12orf54Q6X4T0 127 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 OR4K15Q8NH41 348 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 OR9G1Q8NH87 305 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 RFESDQ8TAC1 157 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 NDNFQ8TB73 568 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 CHCHD6Q9BRQ6 235 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 NICN1Q9BSH3 213 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 ZNF286AQ9HBT8 521 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 VPREB3Q9UKI3 123 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 RAB22AQ9UL26 194 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 DSCAML1Q8TD84 2053 aa12.18□□□□□ -0.46
UPF1-202ENST00000594243 LOC100506127A0A0U1RQW1 187 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 FAM172BPA6NC97 362 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 NOTOA8MTQ0 251 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 LEUTXA8MZ59 168 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 C15orf65H3BRN8 121 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 H3BUX3 64 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 SPINT2O43291 252 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 IGLV1-47P01700 117 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 JUNBP17275 347 aaPredicted RBP12.17□□□□□ -0.46
UPF1-202ENST00000594243 GADD45AP24522 165 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 SSTR5P35346 364 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 CEACAM3P40198 252 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 LTC4SQ16873 150 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 C6orf201Q7Z4U5 140 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 OR56B1Q8NGI3 324 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 OR52M1Q8NGK5 317 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 OR4P4Q8NGL7 312 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 FAAP24Q9BTP7 215 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 LIN7BQ9HAP6 207 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 ABCB10Q9NRK6 738 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 KCNIP1Q9NZI2 227 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 DPM3Q9P2X0 92 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 HSF4Q9ULV5 492 aa12.17□□□□□ -0.46
UPF1-202ENST00000594243 TMEM272A0A1B0GTI8 110 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 TRIM64CA6NLI5 447 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 VGLL3A8MV65 326 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 BUB1B-PAK6H3BSN5 160 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 J3QR06 171 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 LDLRAD4O15165 306 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 SOCS1O15524 211 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 GPR137BO60478 399 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 VEGFCP49767 419 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 ARHGDIBP52566 201 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 HLA-DRB5Q30154 266 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 TMEM30BQ3MIR4 351 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 Q6ZTK2 550 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 ZNF554Q86TJ5 538 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 PTX4Q96A99 478 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 SULT4A1Q9BR01 284 aa12.16□□□□□ -0.46
UPF1-202ENST00000594243 RIMS4Q9H426 269 aaPredicted RBP12.16□□□□□ -0.46
UPF1-202ENST00000594243 MBNL3Q9NUK0 354 aaKnown RBP12.16□□□□□ -0.46
UPF1-202ENST00000594243 AMMECR1Q9Y4X0 333 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms