RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 FOXRED2Q8IWF2 684 aa9.2□□□□□ -0.94
CLIP3-204ENST00000590559 SUMF2Q8NBJ7 301 aa9.2□□□□□ -0.94
CLIP3-204ENST00000590559 OR10K1Q8NGX5 313 aa9.2□□□□□ -0.94
CLIP3-204ENST00000590559 RHOXF1Q8NHV9 184 aa9.2□□□□□ -0.94
CLIP3-204ENST00000590559 DPCDQ9BVM2 203 aaPredicted RBP9.2□□□□□ -0.94
CLIP3-204ENST00000590559 JAM3Q9BX67 310 aa9.2□□□□□ -0.94
CLIP3-204ENST00000590559 SCOCQ9UIL1 159 aa9.2□□□□□ -0.94
CLIP3-204ENST00000590559 ZNF580Q9UK33 172 aa9.2□□□□□ -0.94
CLIP3-204ENST00000590559 DHDHQ9UQ10 334 aa9.2□□□□□ -0.94
CLIP3-204ENST00000590559 DNAH1Q9P2D7 4330 aa9.2□□□□□ -0.94
CLIP3-204ENST00000590559 NUDT19A8MXV4 375 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 CCRL2O00421 344 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 CD1BP29016 333 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 RASSF2P50749 326 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 ALDH3A2P51648 485 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 ZNF137PP52743 207 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 GP2P55259 537 aaKnown RBP9.19□□□□□ -0.94
CLIP3-204ENST00000590559 RAB40BQ12829 278 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 FOXE3Q13461 319 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 FHL3Q13643 280 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 LTC4SQ16873 150 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 Q3ZCU0 254 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 LPCAT4Q643R3 524 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 FAM53AQ6NSI3 398 aaPredicted RBP9.19□□□□□ -0.94
CLIP3-204ENST00000590559 UNQ9370/PRO34162Q6UXP9 181 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 LCNL1Q6ZST4 164 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 FAM71E2Q8N5Q1 922 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 ZNF439Q8NDP4 499 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 OR10X1Q8NGY0 326 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 MYOZ3Q8TDC0 251 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 TNFAIP8L1Q8WVP5 186 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 RTN4IP1Q8WWV3 396 aaPredicted RBP9.19□□□□□ -0.94
CLIP3-204ENST00000590559 CPNE2Q96FN4 548 aaPredicted RBP9.19□□□□□ -0.94
CLIP3-204ENST00000590559 MRPL48Q96GC5 212 aaKnown RBP9.19□□□□□ -0.94
CLIP3-204ENST00000590559 MYCBPQ99417 103 aaPredicted RBP9.19□□□□□ -0.94
CLIP3-204ENST00000590559 ST3GAL6Q9Y274 331 aa9.19□□□□□ -0.94
CLIP3-204ENST00000590559 IGHV3-72A0A0B4J1Y9 119 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 SNTNA6NMZ2 147 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 ORC5O43913 435 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 MPZL2O60487 215 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 ATP5HO75947 161 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 CDRT1O95170 752 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 IGHG4P01861 327 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 ELANEP08246 267 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 LIMS3P0CW19 117 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 LIMS4P0CW20 117 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 REG1BP48304 166 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 LUMP51884 338 aaPredicted RBP9.18□□□□□ -0.94
CLIP3-204ENST00000590559 GTF2A1P52655 376 aaPredicted RBP9.18□□□□□ -0.94
CLIP3-204ENST00000590559 RBM11P57052 281 aaKnown RBP9.18□□□□□ -0.94
CLIP3-204ENST00000590559 GPR50Q13585 617 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 RSU1Q15404 277 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 DEFB136Q30KP8 78 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 ZIK1Q3SY52 487 aaPredicted RBP9.18□□□□□ -0.94
CLIP3-204ENST00000590559 XAF1Q6GPH4 301 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 ZNF497Q6ZNH5 498 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 MOB3BQ86TA1 216 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 LINC00596Q86U02 117 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 GAPTQ8N292 157 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 OR52I1Q8NGK6 324 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 OR2T10Q8NGZ9 312 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 OR8U1Q8NH10 309 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 TSEN15Q8WW01 171 aaKnown RBP9.18□□□□□ -0.94
CLIP3-204ENST00000590559 PYDC1Q8WXC3 89 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 TFAP2CQ92754 450 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 S1PR3Q99500 378 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 GFOD1Q9NXC2 390 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 TAS2R4Q9NYW5 299 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 U3KQK5 164 aa9.18□□□□□ -0.94
CLIP3-204ENST00000590559 TMEM30CPA0ZSE6 113 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 NCBP2LA6PVI3 153 aaKnown RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 ZNF736B4DX44 427 aaPredicted RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 GEMIN2O14893 280 aaKnown RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 HTR3BO95264 441 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 FADS2O95864 444 aaKnown RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 MT-ND4P03905 459 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 IGF1P05019 195 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 PSMB8P28062 276 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 ZNF134P52741 427 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 GBX2P52951 348 aaPredicted RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 F2RL1P55085 397 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 KIAA0141Q14154 515 aaPredicted RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 CCDC58Q4VC31 144 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 C9orf66Q5T8R8 295 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 SLC25A48Q6ZT89 311 aaKnown RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 SATL1Q86VE3 508 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 OR52N1Q8NH53 320 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 APH1BQ8WW43 257 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 ARL11Q969Q4 196 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 RBMXL1Q96E39 390 aaKnown RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 GPER1Q99527 375 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 HSPB9Q9BQS6 159 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 GON7Q9BXV9 100 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 AMBNQ9NP70 447 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 FGF20Q9NP95 211 aaPredicted RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 FAM118AQ9NWS6 357 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 RCC2Q9P258 522 aaKnown RBP9.17□□□□□ -0.94
CLIP3-204ENST00000590559 ORC6Q9Y5N6 252 aa9.17□□□□□ -0.94
CLIP3-204ENST00000590559 SDCBPO00560 298 aaPredicted RBP9.16□□□□□ -0.94
CLIP3-204ENST00000590559 SLC31A2O15432 143 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms