RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 BPESC1Q9GZL8 116 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 FAM234AQ9H0X4 552 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 DNTTIP1Q9H147 329 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 SEBOXQ9HB31 216 aaPredicted RBP4.41□□□□□ -1.7
LIG3-210ENST00000588109 SCPEP1Q9HB40 452 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 AKIP1Q9NQ31 210 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 C12orf4Q9NQ89 552 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 IFT46Q9NQC8 304 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 SLC25A10Q9UBX3 287 aaPredicted RBP4.41□□□□□ -1.7
LIG3-210ENST00000588109 MIOXQ9UGB7 285 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 AK3Q9UIJ7 227 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 ZNF222Q9UK12 451 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 MAB21L2Q9Y586 359 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 USF3Q68DE3 2245 aa4.4□□□□□ -1.7
LIG3-210ENST00000588109 IGHV4-30-2A0A087WSY4 118 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 MEIKINA0A087WXM9 373 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 A0A1B0GW55 424 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 A0A1W2PRX2 142 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 MEIOCA2RUB1 952 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 FUOMA2VDF0 154 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 GABARAPH6UMI1 98 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 J3QRK9 145 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 K7N7A8 449 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 SULT1C2O00338 296 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 MGST3O14880 152 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 CTDSPLO15194 276 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 ZNF737O75373 536 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 CA11O75493 328 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 RBBP9O75884 186 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 CSN2P05814 226 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 FCER2P06734 321 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 LPLP06858 475 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 HEXAP06865 529 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 DUX4L2P0CJ85 424 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 DUX4L3P0CJ86 424 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 DUX4L4P0CJ87 422 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 DUX4L5P0CJ88 424 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 DUX4L6P0CJ89 424 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 DUX4L7P0CJ90 424 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 SELLP14151 372 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 CD40LGP29965 261 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 CBX5P45973 191 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 OR3A1P47881 315 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 PPP5CP53041 499 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 P2RX3P56373 397 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 ACTBP60709 375 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 GNB2P62879 340 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 ACTG1P63261 375 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 DGCR2P98153 550 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 ICAM4Q14773 271 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 ZNF79Q15937 498 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 ESCO2Q56NI9 601 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 Q5PR19 223 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 ATPAF1Q5TC12 328 aaPredicted RBP4.4□□□□□ -1.71
LIG3-210ENST00000588109 SHEQ5VZ18 495 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 C16orf87Q6PH81 154 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 DUX4L9Q6RFH8 374 aaPredicted RBP4.4□□□□□ -1.71
LIG3-210ENST00000588109 C17orf107Q6ZR85 190 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 TPRX1Q8N7U7 411 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 GDPD1Q8N9F7 314 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 OR4K15Q8NH41 348 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 OR52I2Q8NH67 350 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 PLPPR1Q8TBJ4 325 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 C10orf105Q8TEF2 133 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 CCDC107Q8WV48 283 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 SMIM4Q8WVI0 70 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 RAB39BQ96DA2 213 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 HDHD3Q9BSH5 251 aaPredicted RBP4.4□□□□□ -1.71
LIG3-210ENST00000588109 THAP7Q9BT49 309 aaPredicted RBP4.4□□□□□ -1.71
LIG3-210ENST00000588109 CCDC32Q9BV29 185 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 ST6GALNAC5Q9BVH7 336 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 SRRQ9GZT4 340 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 SHARPINQ9H0F6 387 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 MEGF9Q9H1U4 602 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 RIMS4Q9H426 269 aaPredicted RBP4.4□□□□□ -1.71
LIG3-210ENST00000588109 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.4□□□□□ -1.71
LIG3-210ENST00000588109 ABCB10Q9NRK6 738 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 KCNIP1Q9NZI2 227 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 KAAG1Q9UBP8 84 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 CTSZQ9UBR2 303 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 DUX4Q9UBX2 424 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 CLN8Q9UBY8 286 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 ZNF230Q9UIE0 474 aaPredicted RBP4.4□□□□□ -1.71
LIG3-210ENST00000588109 ELF5Q9UKW6 265 aaPredicted RBP4.4□□□□□ -1.71
LIG3-210ENST00000588109 TRAPPC2LQ9UL33 140 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 KCNK7Q9Y2U2 307 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 LRBAP50851 2863 aa4.4□□□□□ -1.71
LIG3-210ENST00000588109 FASNP49327 2511 aaKnown RBP4.4□□□□□ -1.71
LIG3-210ENST00000588109 AKAP6Q13023 2319 aa4.39□□□□□ -1.71
LIG3-210ENST00000588109 TRGV10A0A0A0MS01 117 aa4.39□□□□□ -1.71
LIG3-210ENST00000588109 TRAV39A0A0B4J263 110 aa4.39□□□□□ -1.71
LIG3-210ENST00000588109 LINC00854A0A1B0GVQ3 168 aa4.39□□□□□ -1.71
LIG3-210ENST00000588109 A0A1W2PQ09 198 aa4.39□□□□□ -1.71
LIG3-210ENST00000588109 hADV38S2A0JD32 116 aa4.39□□□□□ -1.71
LIG3-210ENST00000588109 ODAMA1E959 279 aa4.39□□□□□ -1.71
LIG3-210ENST00000588109 MEX3AA1L020 520 aaKnown RBP4.39□□□□□ -1.71
LIG3-210ENST00000588109 TNFRSF13BO14836 293 aaPredicted RBP4.39□□□□□ -1.71
LIG3-210ENST00000588109 GSTZ1O43708 216 aaPredicted RBP4.39□□□□□ -1.71
LIG3-210ENST00000588109 SSX5O60225 188 aa4.39□□□□□ -1.71
LIG3-210ENST00000588109 MT-ND4P03905 459 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms